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The map label for this gene is ymfO [C]

Identifier: 226949980

GI number: 226949980

Start: 2943195

End: 2944445

Strand: Reverse

Name: ymfO [C]

Synonym: CLM_2933

Alternate gene names: 226949980

Gene position: 2944445-2943195 (Counterclockwise)

Preceding gene: 226949981

Following gene: 226949979

Centisome position: 70.86

GC content: 27.34

Gene sequence:

>1251_bases
ATGGGCATATTTAATAAAATGTGGGCTATAAAAAATACAACAATTGAAACAGTAAATCAGAGTGATTGGTTTACGAGTTC
AATAAAAAGTAGAACTACAACAAGTGGAGAGAAAGTAACAAAAGAAAGTGCTTTAACAATTAGTGGTGTATATGCTTGTA
CTGATATAATTTCAAGCTCTATTTCTAAGTTACCTATTCACATATATCAGAAAAATAAAGATGGCAGTAATAGAGTTGAT
AATGATGTTAGTTATTTACTTGAAAAGAGACCTAATTTATATATGACGCCTAGCACATTTAAACAAACATTAACAGTTAA
ATTATTATTAGATGGTAATACTTATGTTTGGATAGAAAGACGAAGAGGTAAAGCAATTAATCTTTGGATTTTAAATAATG
TACAAGTTTTACAAGATTCTACAAAGGGTGAAATCATATATAAATCAACTCTAAATAATAAATCTCACACCTTTTTTAAT
GATGAAATAATACATATAAAAAGTTTATCTACAGATGGAATATTAGGAAAAAGTAAAATAGATATACTTAGAGAAACTAT
AGGAAATATGCAAAGCAGTAGAAAATTATTAGGTAATTATTTTAAAAACGGTACTACTACAAGTGGTGTAATAACTTATC
CTAGTAACCTTAATACTGATGCAAAAACTGAAATAAGAAAGCAATGGCAAGAAAATAATAGTGGATATGATAATGCTGGT
AAAGTTGCTGTATTAGATTTAGGACTAGAATATAAGGAAATAAATAGCTTGAAATTTACTGACCAACAGTTTTTAGAATC
TACAAAATTTACACTTGAAGAAATTGCTAGAGTATTTAAAGTGCCACTGCACATGATCAATTCTCTTGATAGAAGTACCT
TTAATAATATAGAGCAACAGAGTTTGGACTTTTATATGAATACTATATTACCGTTACTATTGCAAATTGAAGAAGAATTT
AATTATAAATTATTTAGTAGTACACAAAGGGAGAAATATTTTATTAAATTTAATATGGAAGGTGCTTTAAGGGGAGATAG
TGCTACAAGAAGTGCTTACTACGAAAAAATGATAAATTTAGGAGTATATAGTATCAATGAAGTAAGAAAGCTTGAAAATA
TGAATTCCATAGGTATTCAAGGTGATACTCATAGAGTTGACTTAAATCATGTTGATATAAAAGTAGCTAATGATTATCAA
TTAGCGAAAGCAAATTCTAAAAATAAGGGTGGTGAAATAGATAATGAGTAA

Upstream 100 bases:

>100_bases
ATTTTGATTTTGATAGGTTTAATTCTAAGTAAACTGCCTAAGAAAGATAGTAATTAATAATGATATTAATAAATCTACTA
TAGAAAGGTAGGTGAAATAA

Downstream 100 bases:

>100_bases
GTTTTATGAATTTAAAAACAAGACGGATAACAATATAGATATATATGTTTATGGTGAAATTATAGGTGGTTCTAAAAAAT
GGGATGAATCAGATGTAACA

Product: phage portal protein, HK97 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MGIFNKMWAIKNTTIETVNQSDWFTSSIKSRTTTSGEKVTKESALTISGVYACTDIISSSISKLPIHIYQKNKDGSNRVD
NDVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWIERRRGKAINLWILNNVQVLQDSTKGEIIYKSTLNNKSHTFFN
DEIIHIKSLSTDGILGKSKIDILRETIGNMQSSRKLLGNYFKNGTTTSGVITYPSNLNTDAKTEIRKQWQENNSGYDNAG
KVAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQSLDFYMNTILPLLLQIEEEF
NYKLFSSTQREKYFIKFNMEGALRGDSATRSAYYEKMINLGVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQ
LAKANSKNKGGEIDNE

Sequences:

>Translated_416_residues
MGIFNKMWAIKNTTIETVNQSDWFTSSIKSRTTTSGEKVTKESALTISGVYACTDIISSSISKLPIHIYQKNKDGSNRVD
NDVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWIERRRGKAINLWILNNVQVLQDSTKGEIIYKSTLNNKSHTFFN
DEIIHIKSLSTDGILGKSKIDILRETIGNMQSSRKLLGNYFKNGTTTSGVITYPSNLNTDAKTEIRKQWQENNSGYDNAG
KVAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQSLDFYMNTILPLLLQIEEEF
NYKLFSSTQREKYFIKFNMEGALRGDSATRSAYYEKMINLGVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQ
LAKANSKNKGGEIDNE
>Mature_415_residues
GIFNKMWAIKNTTIETVNQSDWFTSSIKSRTTTSGEKVTKESALTISGVYACTDIISSSISKLPIHIYQKNKDGSNRVDN
DVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWIERRRGKAINLWILNNVQVLQDSTKGEIIYKSTLNNKSHTFFND
EIIHIKSLSTDGILGKSKIDILRETIGNMQSSRKLLGNYFKNGTTTSGVITYPSNLNTDAKTEIRKQWQENNSGYDNAGK
VAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQSLDFYMNTILPLLLQIEEEFN
YKLFSSTQREKYFIKFNMEGALRGDSATRSAYYEKMINLGVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQL
AKANSKNKGGEIDNE

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 47493; Mature: 47362

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIFNKMWAIKNTTIETVNQSDWFTSSIKSRTTTSGEKVTKESALTISGVYACTDIISSS
CCCCHHHHEECCCEEEECCCCCHHHHHHHCCCCCCCHHHHHCCCEEEEHHHHHHHHHHHH
ISKLPIHIYQKNKDGSNRVDNDVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWIER
HHHCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEECHHHHCEEEEEEEEECCCEEEEEEE
RRGKAINLWILNNVQVLQDSTKGEIIYKSTLNNKSHTFFNDEIIHIKSLSTDGILGKSKI
CCCCEEEEEEECCEEEEECCCCCCEEEEECCCCCCCEEECCCEEEEEECCCCCCCCHHHH
DILRETIGNMQSSRKLLGNYFKNGTTTSGVITYPSNLNTDAKTEIRKQWQENNSGYDNAG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCC
KVAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQ
CEEEEEECCCHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLDFYMNTILPLLLQIEEEFNYKLFSSTQREKYFIKFNMEGALRGDSATRSAYYEKMINL
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
GVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQLAKANSKNKGGEIDNE
CCCCHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEECCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
GIFNKMWAIKNTTIETVNQSDWFTSSIKSRTTTSGEKVTKESALTISGVYACTDIISSS
CCCHHHHEECCCEEEECCCCCHHHHHHHCCCCCCCHHHHHCCCEEEEHHHHHHHHHHHH
ISKLPIHIYQKNKDGSNRVDNDVSYLLEKRPNLYMTPSTFKQTLTVKLLLDGNTYVWIER
HHHCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEECHHHHCEEEEEEEEECCCEEEEEEE
RRGKAINLWILNNVQVLQDSTKGEIIYKSTLNNKSHTFFNDEIIHIKSLSTDGILGKSKI
CCCCEEEEEEECCEEEEECCCCCCEEEEECCCCCCCEEECCCEEEEEECCCCCCCCHHHH
DILRETIGNMQSSRKLLGNYFKNGTTTSGVITYPSNLNTDAKTEIRKQWQENNSGYDNAG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCC
KVAVLDLGLEYKEINSLKFTDQQFLESTKFTLEEIARVFKVPLHMINSLDRSTFNNIEQQ
CEEEEEECCCHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLDFYMNTILPLLLQIEEEFNYKLFSSTQREKYFIKFNMEGALRGDSATRSAYYEKMINL
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
GVYSINEVRKLENMNSIGIQGDTHRVDLNHVDIKVANDYQLAKANSKNKGGEIDNE
CCCCHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEECCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA