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The map label for this gene is ymdB [C]

Identifier: 226949519

GI number: 226949519

Start: 2537079

End: 2537621

Strand: Reverse

Name: ymdB [C]

Synonym: CLM_2454

Alternate gene names: 226949519

Gene position: 2537621-2537079 (Counterclockwise)

Preceding gene: 226949520

Following gene: 226949518

Centisome position: 61.07

GC content: 30.76

Gene sequence:

>543_bases
TTGACTATATCATATATAAATAAAATAAAGATAGTAAAGAGTGATATTACAAAAGAAAATGTAGATGCTATTGTTAATGC
TGCAAACAGTAGCTTGCTTGGAGGTAGTGGTGTAGATGGAGCTATTCATAGAGCAGGTGGGAATAAGATACTTGAGGAAT
GTAAAAGTATTGTAAGTAAAATAGGTCCATTAAGGACAGGAGAAGCAGTGATAACCTCTGGAGGAAATCTTAAGGCTAAA
TATGTTATTCATACTGTAGGACCTATATGGCATGGAGGAAAGAGTAATGAAGAAACTCTTTTAGCTAATTCCTATAAAAA
TAGCTTAAAATTAGCTGCTGAAAAAAATATTAAAACCATTGCTTTCCCTAACATAAGCACAGGGGTATATAGATATCCTA
AAAATCAGGCAGCAAAGGTTGCCTATAATTCAGTAAAAGATAGTCTAATAAAATATGAAAATATAGAAGAAGTAAGATTT
GTATGTTTTGATGAGTACAATTATAAATTATATCAGGATTTACTATTTGCTGATACGAAATAA

Upstream 100 bases:

>100_bases
AATCAGGCTTACACAGAACTATGTAATATTGTGGAAGCTGTTATTGATGACATTATAATTATGATACTAAGTAATAAAAA
GATATTAAGGGGGTTAGATT

Downstream 100 bases:

>100_bases
GAGTTTTTTTATAGAGGTTTACTAATAATTATTTATTAGTAAAACAATGTTAAAAAGTATCATGGCTTTAAATTTGAGTT
TATAAATAGTAGAAAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MTISYINKIKIVKSDITKENVDAIVNAANSSLLGGSGVDGAIHRAGGNKILEECKSIVSKIGPLRTGEAVITSGGNLKAK
YVIHTVGPIWHGGKSNEETLLANSYKNSLKLAAEKNIKTIAFPNISTGVYRYPKNQAAKVAYNSVKDSLIKYENIEEVRF
VCFDEYNYKLYQDLLFADTK

Sequences:

>Translated_180_residues
MTISYINKIKIVKSDITKENVDAIVNAANSSLLGGSGVDGAIHRAGGNKILEECKSIVSKIGPLRTGEAVITSGGNLKAK
YVIHTVGPIWHGGKSNEETLLANSYKNSLKLAAEKNIKTIAFPNISTGVYRYPKNQAAKVAYNSVKDSLIKYENIEEVRF
VCFDEYNYKLYQDLLFADTK
>Mature_179_residues
TISYINKIKIVKSDITKENVDAIVNAANSSLLGGSGVDGAIHRAGGNKILEECKSIVSKIGPLRTGEAVITSGGNLKAKY
VIHTVGPIWHGGKSNEETLLANSYKNSLKLAAEKNIKTIAFPNISTGVYRYPKNQAAKVAYNSVKDSLIKYENIEEVRFV
CFDEYNYKLYQDLLFADTK

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=173, Percent_Identity=49.1329479768786, Blast_Score=151, Evalue=3e-37,
Organism=Homo sapiens, GI13569840, Length=171, Percent_Identity=45.6140350877193, Blast_Score=143, Evalue=6e-35,
Organism=Homo sapiens, GI20336746, Length=167, Percent_Identity=32.9341317365269, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI226371710, Length=160, Percent_Identity=35.625, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI226371706, Length=160, Percent_Identity=35.625, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI226371716, Length=160, Percent_Identity=35.625, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI226371714, Length=160, Percent_Identity=35.625, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI226371712, Length=160, Percent_Identity=35.625, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI226371718, Length=160, Percent_Identity=35.625, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI93141018, Length=170, Percent_Identity=31.1764705882353, Blast_Score=88, Evalue=3e-18,
Organism=Homo sapiens, GI93141020, Length=170, Percent_Identity=31.1764705882353, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI4758496, Length=170, Percent_Identity=31.1764705882353, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI207450721, Length=170, Percent_Identity=34.7058823529412, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI8923143, Length=170, Percent_Identity=34.7058823529412, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI154813199, Length=140, Percent_Identity=32.1428571428571, Blast_Score=84, Evalue=7e-17,
Organism=Homo sapiens, GI8923920, Length=182, Percent_Identity=30.2197802197802, Blast_Score=84, Evalue=8e-17,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=51.4792899408284, Blast_Score=185, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17538214, Length=162, Percent_Identity=49.3827160493827, Blast_Score=128, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24586353, Length=146, Percent_Identity=36.3013698630137, Blast_Score=85, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19735; Mature: 19604

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISYINKIKIVKSDITKENVDAIVNAANSSLLGGSGVDGAIHRAGGNKILEECKSIVSK
CCCCHHHEEEEEHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH
IGPLRTGEAVITSGGNLKAKYVIHTVGPIWHGGKSNEETLLANSYKNSLKLAAEKNIKTI
HCCCCCCCEEEECCCCEEEEEEEEECCCEECCCCCCCCEEEECCCCCCEEEHCCCCEEEE
AFPNISTGVYRYPKNQAAKVAYNSVKDSLIKYENIEEVRFVCFDEYNYKLYQDLLFADTK
ECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCC
>Mature Secondary Structure 
TISYINKIKIVKSDITKENVDAIVNAANSSLLGGSGVDGAIHRAGGNKILEECKSIVSK
CCCHHHEEEEEHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH
IGPLRTGEAVITSGGNLKAKYVIHTVGPIWHGGKSNEETLLANSYKNSLKLAAEKNIKTI
HCCCCCCCEEEECCCCEEEEEEEEECCCEECCCCCCCCEEEECCCCCCEEEHCCCCEEEE
AFPNISTGVYRYPKNQAAKVAYNSVKDSLIKYENIEEVRFVCFDEYNYKLYQDLLFADTK
ECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA