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The map label for this gene is yfmS [H]

Identifier: 226949471

GI number: 226949471

Start: 2485185

End: 2486336

Strand: Reverse

Name: yfmS [H]

Synonym: CLM_2404

Alternate gene names: 226949471

Gene position: 2486336-2485185 (Counterclockwise)

Preceding gene: 226949472

Following gene: 226949468

Centisome position: 59.84

GC content: 33.16

Gene sequence:

>1152_bases
ATGATTTCAGTAAATGAATTAGAAAGTTTAAAGGTATTAGCTGAGGTACAGGCAAATGAAATTCCAGGAGGAATTATATT
TGGAATAATGGAAGGGGATACTATAGTATGGGTAAAATCTTCTGATTCGCTTAATATCAAATTACTTAGTGTAGGAAATA
GATTAAGTAGTGATAGTACTACTCTTATTGCAATGCGTCAAAGAAAAGTTTTATCTCAAAATATTGACCGTTCTGCGTAT
GGAATAAGATTGACTATTACTTCAATTCCAATTGTAGATGAGGAAGATAATGTGGTTGGGGCCTTTGCTATGGCGGTTCC
AAAGTTACATCCTATTGGTAAATCCTTTGGGAGTTTTGCACCAATGCTGGGGGAAATGTTTCAAGAAGGAGCCTTCTTAT
TTACAACAGATTTAAATAAAGTTGTAGATACACAGTCTTCAGAAAAATTTGATGTTTCAACAATACAATCAGGAGATAAA
CTTAAAGAGGATTTTATAGCAGGTAAAGTAATAAAAACAGGAAGACCACAGTTAGAGCAAGTAAAAACTTTAGAATATGG
AGTCCCTGTAATTTTATCGGGTTATCCATTATTTGATGAGGAAAATGAAAACAAAGTTGTAGGCTCATTTTGTATAATTA
TGCCGCAGGAAGTTGCAGACAAATTGAGAACAATGTCTGGTAATCTTGAAGATAATCTTTCAGAAATCTCCTCTACCATT
GAAGAGTTAGCAGCATCCGCATCTCAAATCCATACAAATGAACAGGATTTAAATCAGGAGATAAACAAAATAATAGCTGT
ATCAGAAGAAATTAATGAAATATCTTCTTTTATAAAGGAGATAGCTGATGAAACAAAGATGCTTGGATTAAATGCAGCTA
TTGAAGCTGCTAGAGCTGGAGAGGCTGGAAAAGGTTTTGGGGTAGTTGCAAAAGAAATAAGAAGATTATCTGAGCAATCT
AAAAGTACAGTACCAAAAATTAAAGAGTTAACAGATAATATTAAGATAAAGGTAGAAGATGTAAGTAAAAAAAGTCAAAG
TTCATTAGTTTCAAGTCAAGAACAAGCAGCAGCTTCACAGCAAATTACAGCAGGTATAGAGGAAATAACTTCTATGTCTG
AAGAATTAAATACTATTGCACAGAAACTATAG

Upstream 100 bases:

>100_bases
GATATTTTTTATTATTAAAGTGTACAAGATATAATGAAAAATAAGTGATTTAATACTTTATGTGTTTGTAATGAACATTT
TAATATAGGGAGGACGTATT

Downstream 100 bases:

>100_bases
ACTTCTTATTATAAAGATAAATCAAAAATTTTGCAAAAGAATGTGAAAATTTTACCAAATGTTTTATAATTTTAAGAGTA
TATAAAAAACAACATAATCT

Product: putative methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: Methyl-accepting chemotaxis protein [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MISVNELESLKVLAEVQANEIPGGIIFGIMEGDTIVWVKSSDSLNIKLLSVGNRLSSDSTTLIAMRQRKVLSQNIDRSAY
GIRLTITSIPIVDEEDNVVGAFAMAVPKLHPIGKSFGSFAPMLGEMFQEGAFLFTTDLNKVVDTQSSEKFDVSTIQSGDK
LKEDFIAGKVIKTGRPQLEQVKTLEYGVPVILSGYPLFDEENENKVVGSFCIIMPQEVADKLRTMSGNLEDNLSEISSTI
EELAASASQIHTNEQDLNQEINKIIAVSEEINEISSFIKEIADETKMLGLNAAIEAARAGEAGKGFGVVAKEIRRLSEQS
KSTVPKIKELTDNIKIKVEDVSKKSQSSLVSSQEQAAASQQITAGIEEITSMSEELNTIAQKL

Sequences:

>Translated_383_residues
MISVNELESLKVLAEVQANEIPGGIIFGIMEGDTIVWVKSSDSLNIKLLSVGNRLSSDSTTLIAMRQRKVLSQNIDRSAY
GIRLTITSIPIVDEEDNVVGAFAMAVPKLHPIGKSFGSFAPMLGEMFQEGAFLFTTDLNKVVDTQSSEKFDVSTIQSGDK
LKEDFIAGKVIKTGRPQLEQVKTLEYGVPVILSGYPLFDEENENKVVGSFCIIMPQEVADKLRTMSGNLEDNLSEISSTI
EELAASASQIHTNEQDLNQEINKIIAVSEEINEISSFIKEIADETKMLGLNAAIEAARAGEAGKGFGVVAKEIRRLSEQS
KSTVPKIKELTDNIKIKVEDVSKKSQSSLVSSQEQAAASQQITAGIEEITSMSEELNTIAQKL
>Mature_383_residues
MISVNELESLKVLAEVQANEIPGGIIFGIMEGDTIVWVKSSDSLNIKLLSVGNRLSSDSTTLIAMRQRKVLSQNIDRSAY
GIRLTITSIPIVDEEDNVVGAFAMAVPKLHPIGKSFGSFAPMLGEMFQEGAFLFTTDLNKVVDTQSSEKFDVSTIQSGDK
LKEDFIAGKVIKTGRPQLEQVKTLEYGVPVILSGYPLFDEENENKVVGSFCIIMPQEVADKLRTMSGNLEDNLSEISSTI
EELAASASQIHTNEQDLNQEINKIIAVSEEINEISSFIKEIADETKMLGLNAAIEAARAGEAGKGFGVVAKEIRRLSEQS
KSTVPKIKELTDNIKIKVEDVSKKSQSSLVSSQEQAAASQQITAGIEEITSMSEELNTIAQKL

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=129, Percent_Identity=35.6589147286822, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787690, Length=129, Percent_Identity=36.4341085271318, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367378, Length=117, Percent_Identity=40.1709401709402, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788194, Length=177, Percent_Identity=31.0734463276836, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788195, Length=128, Percent_Identity=35.15625, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004089 [H]

Pfam domain/function: PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 41663; Mature: 41663

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVNELESLKVLAEVQANEIPGGIIFGIMEGDTIVWVKSSDSLNIKLLSVGNRLSSDST
CCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCC
TLIAMRQRKVLSQNIDRSAYGIRLTITSIPIVDEEDNVVGAFAMAVPKLHPIGKSFGSFA
CHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHH
PMLGEMFQEGAFLFTTDLNKVVDTQSSEKFDVSTIQSGDKLKEDFIAGKVIKTGRPQLEQ
HHHHHHHHCCCEEEEECHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHCHHHHCCCCHHHH
VKTLEYGVPVILSGYPLFDEENENKVVGSFCIIMPQEVADKLRTMSGNLEDNLSEISSTI
HHHHHCCCCEEEECCCCCCCCCCCEEEEHEEEEECHHHHHHHHHHCCCHHHHHHHHHHHH
EELAASASQIHTNEQDLNQEINKIIAVSEEINEISSFIKEIADETKMLGLNAAIEAARAG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC
EAGKGFGVVAKEIRRLSEQSKSTVPKIKELTDNIKIKVEDVSKKSQSSLVSSQEQAAASQ
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHH
QITAGIEEITSMSEELNTIAQKL
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MISVNELESLKVLAEVQANEIPGGIIFGIMEGDTIVWVKSSDSLNIKLLSVGNRLSSDST
CCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCC
TLIAMRQRKVLSQNIDRSAYGIRLTITSIPIVDEEDNVVGAFAMAVPKLHPIGKSFGSFA
CHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHH
PMLGEMFQEGAFLFTTDLNKVVDTQSSEKFDVSTIQSGDKLKEDFIAGKVIKTGRPQLEQ
HHHHHHHHCCCEEEEECHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHCHHHHCCCCHHHH
VKTLEYGVPVILSGYPLFDEENENKVVGSFCIIMPQEVADKLRTMSGNLEDNLSEISSTI
HHHHHCCCCEEEECCCCCCCCCCCEEEEHEEEEECHHHHHHHHHHCCCHHHHHHHHHHHH
EELAASASQIHTNEQDLNQEINKIIAVSEEINEISSFIKEIADETKMLGLNAAIEAARAG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC
EAGKGFGVVAKEIRRLSEQSKSTVPKIKELTDNIKIKVEDVSKKSQSSLVSSQEQAAASQ
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHH
QITAGIEEITSMSEELNTIAQKL
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]