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The map label for this gene is yajR [H]

Identifier: 226949006

GI number: 226949006

Start: 1970471

End: 1971655

Strand: Direct

Name: yajR [H]

Synonym: CLM_1920

Alternate gene names: 226949006

Gene position: 1970471-1971655 (Clockwise)

Preceding gene: 226949004

Following gene: 226949007

Centisome position: 47.42

GC content: 28.69

Gene sequence:

>1185_bases
ATGAAAAAGAATGTGTTTTCAAAAAAAGAATTAATGTTTATATGTACACTAGGGTTTGCCTTAGGTATAAGGCAGATGGC
TATGACTATGGTTATGCCCTTTATATCTGTTTATAGCAAAACTTTGGCTTATAGTACTCCAGTATTAGCTGGTGTAGCAT
TAGGTATATTTGGTCTTATGCAAGCTTTTTTTCAGATACCTTTTGGTGTTTTTAGTGATAAATTTGGGAATAAAAAAGTT
ATTTTAATAGGGCTTATGCAAGTAATTATAGGACTATTATTGGCTTATTTTGCAAAGAATATTTATTTATTAATAGTTGC
TAGAGCCCTGCAGGGAAGTGGTGCTATAATTGCAGTAGGATATTCTTGGGTTTCTAGCAGTGTACATTGTGAGAAACGAA
CAAGAGCTATAAGTATAGTTGGGATTATATTGGGTTTTGCAGCTACAGCTTCCTTTGCTTTAGGACCTATAATACATAAG
TATGTATCTGTAAATAATATGTTCTTATATTGTGCTTTGCTAATATTATTTAGTTGGATTATAATATTAGTATTTTTAAA
AGAAGAAAAATCTCATCATAAAAGTGAAACTAATTCTAAAGAAGAATATTCTAGAAATAATATTAATATTAGGGAAGTTT
TTCATATATTATTAGCCAATGATATATTTGTAAAATTAAATATAGCAGCTTTTTTAAATAATTTTATAATGGCAGCAGTA
TTTTTTGCTTTACCACAGTATTTAGAAAATATTACAGGTATTGATGGTATGTGGAAAATATTTATGCCTTCAGTTCTTAT
AGCTATAGCTTTTATGACATGGGTTGTAAGAGTTTCAGAAAAGGGTTATGGAATAAAGCTATTAATTATATCCTTTGCTA
TTACTGCTTTAGGTGTGATTTTTTATTTTAACAAAAGTTCATTTACATTTATATTAGTAGGAACTATATTATTTATGACA
GGATATATATGTATATGTACATTAGTACCATCCCTCGCCAATGAAATAGCAGAGGAAAGCTATAGGGGTACAGCCAATGG
TATAGTTAATAGTTTTCAATATATAGGGTCTTTTATGGGCTCAGTTATTATGGCAGCTCTATGGGTAAATTATAAAAAAA
TAGCATTGATTTTACTTATAATAGTTTGTATTCTAGGGATAATTATGCTTAAACGTTGTAATTAG

Upstream 100 bases:

>100_bases
ATTATTCTTGACAATTATAGAATGGAAGTATTAAGCTTATGTTAGAAACTTAAAAAACTAATTTAGTTTCCTTAGTGAAT
TTTAATGTAAGAGGTGTATT

Downstream 100 bases:

>100_bases
AGAAATGCTATTGTTTTTAGATATTATAGCATAAAATGAAGAATTTTATTAATAGATGTATAATATAAAGAAAAAATACT
TAATTAAAAACCTTTAGTAT

Product: major facilitator family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MKKNVFSKKELMFICTLGFALGIRQMAMTMVMPFISVYSKTLAYSTPVLAGVALGIFGLMQAFFQIPFGVFSDKFGNKKV
ILIGLMQVIIGLLLAYFAKNIYLLIVARALQGSGAIIAVGYSWVSSSVHCEKRTRAISIVGIILGFAATASFALGPIIHK
YVSVNNMFLYCALLILFSWIIILVFLKEEKSHHKSETNSKEEYSRNNINIREVFHILLANDIFVKLNIAAFLNNFIMAAV
FFALPQYLENITGIDGMWKIFMPSVLIAIAFMTWVVRVSEKGYGIKLLIISFAITALGVIFYFNKSSFTFILVGTILFMT
GYICICTLVPSLANEIAEESYRGTANGIVNSFQYIGSFMGSVIMAALWVNYKKIALILLIIVCILGIIMLKRCN

Sequences:

>Translated_394_residues
MKKNVFSKKELMFICTLGFALGIRQMAMTMVMPFISVYSKTLAYSTPVLAGVALGIFGLMQAFFQIPFGVFSDKFGNKKV
ILIGLMQVIIGLLLAYFAKNIYLLIVARALQGSGAIIAVGYSWVSSSVHCEKRTRAISIVGIILGFAATASFALGPIIHK
YVSVNNMFLYCALLILFSWIIILVFLKEEKSHHKSETNSKEEYSRNNINIREVFHILLANDIFVKLNIAAFLNNFIMAAV
FFALPQYLENITGIDGMWKIFMPSVLIAIAFMTWVVRVSEKGYGIKLLIISFAITALGVIFYFNKSSFTFILVGTILFMT
GYICICTLVPSLANEIAEESYRGTANGIVNSFQYIGSFMGSVIMAALWVNYKKIALILLIIVCILGIIMLKRCN
>Mature_394_residues
MKKNVFSKKELMFICTLGFALGIRQMAMTMVMPFISVYSKTLAYSTPVLAGVALGIFGLMQAFFQIPFGVFSDKFGNKKV
ILIGLMQVIIGLLLAYFAKNIYLLIVARALQGSGAIIAVGYSWVSSSVHCEKRTRAISIVGIILGFAATASFALGPIIHK
YVSVNNMFLYCALLILFSWIIILVFLKEEKSHHKSETNSKEEYSRNNINIREVFHILLANDIFVKLNIAAFLNNFIMAAV
FFALPQYLENITGIDGMWKIFMPSVLIAIAFMTWVVRVSEKGYGIKLLIISFAITALGVIFYFNKSSFTFILVGTILFMT
GYICICTLVPSLANEIAEESYRGTANGIVNSFQYIGSFMGSVIMAALWVNYKKIALILLIIVCILGIIMLKRCN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081738, Length=360, Percent_Identity=28.6111111111111, Blast_Score=144, Evalue=7e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43844; Mature: 43844

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNVFSKKELMFICTLGFALGIRQMAMTMVMPFISVYSKTLAYSTPVLAGVALGIFGLM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QAFFQIPFGVFSDKFGNKKVILIGLMQVIIGLLLAYFAKNIYLLIVARALQGSGAIIAVG
HHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
YSWVSSSVHCEKRTRAISIVGIILGFAATASFALGPIIHKYVSVNNMFLYCALLILFSWI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IILVFLKEEKSHHKSETNSKEEYSRNNINIREVFHILLANDIFVKLNIAAFLNNFIMAAV
HHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHH
FFALPQYLENITGIDGMWKIFMPSVLIAIAFMTWVVRVSEKGYGIKLLIISFAITALGVI
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FYFNKSSFTFILVGTILFMTGYICICTLVPSLANEIAEESYRGTANGIVNSFQYIGSFMG
HEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SVIMAALWVNYKKIALILLIIVCILGIIMLKRCN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKNVFSKKELMFICTLGFALGIRQMAMTMVMPFISVYSKTLAYSTPVLAGVALGIFGLM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QAFFQIPFGVFSDKFGNKKVILIGLMQVIIGLLLAYFAKNIYLLIVARALQGSGAIIAVG
HHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
YSWVSSSVHCEKRTRAISIVGIILGFAATASFALGPIIHKYVSVNNMFLYCALLILFSWI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IILVFLKEEKSHHKSETNSKEEYSRNNINIREVFHILLANDIFVKLNIAAFLNNFIMAAV
HHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHH
FFALPQYLENITGIDGMWKIFMPSVLIAIAFMTWVVRVSEKGYGIKLLIISFAITALGVI
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FYFNKSSFTFILVGTILFMTGYICICTLVPSLANEIAEESYRGTANGIVNSFQYIGSFMG
HEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SVIMAALWVNYKKIALILLIIVCILGIIMLKRCN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]