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The map label for this gene is dppB [H]

Identifier: 226948999

GI number: 226948999

Start: 1963038

End: 1964012

Strand: Direct

Name: dppB [H]

Synonym: CLM_1913

Alternate gene names: 226948999

Gene position: 1963038-1964012 (Clockwise)

Preceding gene: 226948998

Following gene: 226949000

Centisome position: 47.24

GC content: 28.51

Gene sequence:

>975_bases
ATGAATAGTAGATTTTTAAAGATTTTAGAGTATGTAGCTACTGTAGTTATTATACTTACATTAAATTTTTTTATCCCTAG
GCTTATGCCTGGGGACCCTTTTGTTATATTATCTGGAGACACTGGAACAGAAATATCTGCTTATTCAGAAGAACAGATAG
AAAGGTATAAGTCCTATTATGGATTAGATAAACCTTTAGGAAATCAATACTTAGATTATATGAAAAACTTATGCAAAGGC
GATTTAGGATATAGCATTTATTATAATGATATGGTTAAAAACATAGTGAAAGCTAGATTTAAGTGGACTTTTATGTTGGT
TTTGAGCTCCATATCTATAAGCTTTATATTAGGGACTATTATAGGAACTCTATCAGCTTTTAATCAAAATAAAGGGTTAG
ATAAGATTTTGTATGGCTTTTTTATGACTTTATCTGAAATACCTGGCTTTTTATTAGGAATAGTTTTTTTATTTATTCTA
GCAGGAAAATTGAATTTGTTTCCGCTATCTGGAGCTGTAACAGAGTTTAAAAATTATAATTCTTCTGGGGAGAAATTTTT
AGACATAATTTATCATGCAGCATTACCAATTATAACTTTAACTATATCCAAACTAGGAGAATTTTATCTTATAGCAAGAA
GCAGTGCTGTTTCTGTTATATCTAAAGAATATATCAAAACTGCAAAAGGAAAAGGACTAGGCAAAAAAGCAGTTATATTT
AAGCATATCCTTAGGAATTCTATTTTACCTATAATAACAAAAGTGTTTTTAAGTTTAGGATCTATAGTAGGGGGAGCTAT
ATTAGTTGAAAATGTATTTAATTATCCTGGGCTTGGAAAACTTATGAAAGAGGCAGTTTGCGTAAGGGATTATCCTCTTA
TACAGGGTATATTTTTAATAGTTACTTTTATGGTTATTTTTATGAATTTAATTTCAGATATGTTTTATAAAAAATTAGAT
CCAAGGGTGAGATAA

Upstream 100 bases:

>100_bases
AAAACTGATAAATATGATGGATATATGAATATGTATGATCATTTTGTGGTATCTCATAGTAAATTAACTTATTTACAAAG
GAAATAAGGTAGTTGATATT

Downstream 100 bases:

>100_bases
TATATGAAAAAGTATTGTAAAATTTTTAAAAAATGTTCTATTATAGGTAAATTATCTTTATTAGTAGCATTTGTTTTTAT
AATTGTAGCTATTTTATGTC

Product: peptide/opine/nickel uptake ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYYGLDKPLGNQYLDYMKNLCKG
DLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTIIGTLSAFNQNKGLDKILYGFFMTLSEIPGFLLGIVFLFIL
AGKLNLFPLSGAVTEFKNYNSSGEKFLDIIYHAALPIITLTISKLGEFYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLIVTFMVIFMNLISDMFYKKLD
PRVR

Sequences:

>Translated_324_residues
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYYGLDKPLGNQYLDYMKNLCKG
DLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTIIGTLSAFNQNKGLDKILYGFFMTLSEIPGFLLGIVFLFIL
AGKLNLFPLSGAVTEFKNYNSSGEKFLDIIYHAALPIITLTISKLGEFYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLIVTFMVIFMNLISDMFYKKLD
PRVR
>Mature_324_residues
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYYGLDKPLGNQYLDYMKNLCKG
DLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTIIGTLSAFNQNKGLDKILYGFFMTLSEIPGFLLGIVFLFIL
AGKLNLFPLSGAVTEFKNYNSSGEKFLDIIYHAALPIITLTISKLGEFYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLIVTFMVIFMNLISDMFYKKLD
PRVR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=329, Percent_Identity=33.1306990881459, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1787053, Length=318, Percent_Identity=30.8176100628931, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1787497, Length=319, Percent_Identity=29.4670846394984, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787761, Length=337, Percent_Identity=29.673590504451, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788504, Length=356, Percent_Identity=27.247191011236, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789888, Length=327, Percent_Identity=27.217125382263, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787550, Length=285, Percent_Identity=24.5614035087719, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36431; Mature: 36431

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHCCHHHHHHHHHHC
GLDKPLGNQYLDYMKNLCKGDLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTI
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGTLSAFNQNKGLDKILYGFFMTLSEIPGFLLGIVFLFILAGKLNLFPLSGAVTEFKNYN
HHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHCCC
SSGEKFLDIIYHAALPIITLTISKLGEFYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHH
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH
VTFMVIFMNLISDMFYKKLDPRVR
HHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHCCHHHHHHHHHHC
GLDKPLGNQYLDYMKNLCKGDLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTI
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGTLSAFNQNKGLDKILYGFFMTLSEIPGFLLGIVFLFILAGKLNLFPLSGAVTEFKNYN
HHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHCCC
SSGEKFLDIIYHAALPIITLTISKLGEFYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHH
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH
VTFMVIFMNLISDMFYKKLDPRVR
HHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]