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The map label for this gene is ycbZ [H]

Identifier: 226948704

GI number: 226948704

Start: 1668115

End: 1670433

Strand: Direct

Name: ycbZ [H]

Synonym: CLM_1602

Alternate gene names: 226948704

Gene position: 1668115-1670433 (Clockwise)

Preceding gene: 226948703

Following gene: 226948713

Centisome position: 40.14

GC content: 26.39

Gene sequence:

>2319_bases
ATGTTAAGAAAGATAGAGTCAAAAGATTTATTATATAATTTGGAACTCGATGATATTAATATAGATAGAACCCAAAAGTA
TACTCCGGAATATAACTCTATATATGAAAAGATAAATCTTGCTTTGGATATAGATAAATCAGGATACAATTTATACTTAG
TAGATGATTTTTCTAAAGAAAAATTAAATAGTATAATAAATTTTATAAATCAAAAACTAGAGAAAAAAAGTAAACCAAAG
GATATTTGCTATGTAGTTTTAGAGGAAGAAAGATACCCTTATAGTATATATTTAGAAAATGGGAAAGGTAAAATATTAAA
AGAAAAATTAAAAGATATTCAAACAAAATATAATGAATGTATATATGATTTTTATAACAAATCTTCCAATAAAGAAAAAG
AAATTATTTTAGAGAGTATGGAGAAAAAAAGGAGTGAAATAGTAAACGAACTTATAGAGGAGTCAAAAAAAGAAGGTTTT
GAAATAAAAACTGGTGTATCTGGCTTTGTCTTCATGCCTATAAAGGATGGTAATTCTCTAAGTGAAAGTGAATATGAAGA
CTTGAATAAAGAAGACAAAGAAGAGATATTAGAAAAAGTATCTAAATTAAAGGAAAAGGCAGAATCTTCTTTAGAAGTAT
TAGCTGATATGGAAAGAGAAGGATTAGAAAAATTAAAGGATATAATGAGAACTTATTTGGAAATGGAAATGAAAGGTTCA
AAGGAAGAATATAGAATGGAGTTTGAAGATAACATTCAGACTCTAGATTTTTTAAATAGTGTTTGCAGAAATATAGAAAA
GGAATTAATAGAAAGTTACACTTCAAGCTATGAAGAAGATCAAGAATCTATAATAAACGTTATATATAAATATAAAGTAA
ATGTAATAGTAGACAATACTTTAAACAAAAGTCCTTTAGTTATATTTGAAGAAAATCCCTCAGTAAATAATTTAGTTGGA
AGCATAGAATACGAAAATAAAAGTGGAGTATATTATACAGATGCTAGTTTAATTAAAGCCGGATCACTTTTAAAAGCTAA
TGAGGGCTGCTTAATTGTGAGAGCTAACAGTTTGTTTACAAATGGCTCAGCTTATTTTTATTTAAAAAAAGCTCTCATAA
ATGATAAGATAGATTTTGATTATAATAAGGGATATCTAGAACTATTATCTTTGGGAGGATTAAAGCCGGAGCCAATAAAC
ACTAAATTAAAGGTAATAATTATAGGTGATTATGAAACTTACAATTTGCTTTACAATTATGATGAAGATTTTAAAAAGAT
ATTTAAGCTAAAATCAGAATATAATAAAGTAGTGGATATAAATAGCAAGAGTAAAGAACAGATTTGTAAAAATATATATG
ATATATGTGAAAATAAAGATTTAAAAAATATAAATGAAGAGGCAGTAAAAGAAGTATGCAAATATTTATCAAGAAAAGCT
GAAAATAAAAATAAATTTTATTTTGATAATTATGAAATAGATAGATTATTAATACAAGCGGATAGTAAAGCTAGGATTGA
AGATAGAGACATTATAACAAAAGAAGATATTCAATTTGTAGCTTATGAAAAAGAGGAAATAGAAAAAGAAGTTATGGAAG
GTTATGAAAAAGAAAGAATATTTATAGATGTAAAGGGAGATAAAGTTGGTCAAGTAAATGGACTATCTGTAATAGATTTA
GGATATGCAAGTTTTGGAAGACCTATTAGAATAACTTGTTGCTGTTATAAGGGCAATGGAGATATTATAGATATCCAAAA
GGAGAGTAATTTAAGTGGGAATATACACAATAAAGCTATAAGCACATTAAAGGGGTATATAAATAGTATAATAGGGAAAT
ATGATACGTTGCCAGTAGATTTCCATTTAAGTTTTGAACAGATATATGGAACAGTGGATGGAGATAGCGCTTCCGTAGCG
GAGGCCATAGCTATGTTATCTGCTTTAAGTAATATACCTGTTAGACAAAGTATAGCAGTTACAGGATCAATAAATCAGTT
TGGTCAGGTTCAGCCTATAGGTGGTGTAAATGAAAAAATAGAAGGATTTTATGAGGTATGTAGATATAAAAAAGATATAA
AGGATAAGGGGATATTAATACCAAAATCAAATAAAGAAAACTTAGTGTTAAATAAAGAAGTAGAAGACGCTATTAAAAAT
GGAGAGTTTAGTATATATACTATGGAAACTTTGGAGGATGCAGTAAAAATGCTCCTAGGAGAAAAAAATTTAAAATTTAA
TGAATTAATAGTGGAGATAGAAAAAGAACTGAAAAAGTATAATAAGAAATCTAAAAAATGCAGAAAAATAAAATTATGA

Upstream 100 bases:

>100_bases
TAATTTTATATTTTTTATTATGAAAATATAAACCTCTTTAGTTACTAAAATAAACCTTAATGAATATTAATATATTAACG
GCTAAAAGGGGGAGTGAAAC

Downstream 100 bases:

>100_bases
AAAATTATAAATAGATAGATTATAATTAATATAAATGAATTTAAATAAGATGACTTTTGTTTAGTGAAGAAGTCATCTTA
TTGATTCCCAAAACCGGGTA

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKEKLNSIINFINQKLEKKSKPK
DICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNECIYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGF
EIKTGVSGFVFMPIKDGNSLSESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNTLNKSPLVIFEENPSVNNLVG
SIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFTNGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPIN
TKLKVIIIGDYETYNLLYNYDEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERIFIDVKGDKVGQVNGLSVIDL
GYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAISTLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVA
EAIAMLSALSNIPVRQSIAVTGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEDAIKN
GEFSIYTMETLEDAVKMLLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL

Sequences:

>Translated_772_residues
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKEKLNSIINFINQKLEKKSKPK
DICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNECIYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGF
EIKTGVSGFVFMPIKDGNSLSESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNTLNKSPLVIFEENPSVNNLVG
SIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFTNGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPIN
TKLKVIIIGDYETYNLLYNYDEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERIFIDVKGDKVGQVNGLSVIDL
GYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAISTLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVA
EAIAMLSALSNIPVRQSIAVTGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEDAIKN
GEFSIYTMETLEDAVKMLLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL
>Mature_772_residues
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKEKLNSIINFINQKLEKKSKPK
DICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNECIYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGF
EIKTGVSGFVFMPIKDGNSLSESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNTLNKSPLVIFEENPSVNNLVG
SIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFTNGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPIN
TKLKVIIIGDYETYNLLYNYDEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERIFIDVKGDKVGQVNGLSVIDL
GYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAISTLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVA
EAIAMLSALSNIPVRQSIAVTGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEDAIKN
GEFSIYTMETLEDAVKMLLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=448, Percent_Identity=29.0178571428571, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI1786643, Length=201, Percent_Identity=26.3681592039801, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17556486, Length=199, Percent_Identity=29.1457286432161, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 89197; Mature: 89197

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKE
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCCHH
KLNSIINFINQKLEKKSKPKDICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNEC
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
IYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGFEIKTGVSGFVFMPIKDGNSL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCC
SESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNT
HHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC
LNKSPLVIFEENPSVNNLVGSIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFT
CCCCCEEEECCCCCCCCEEEEEEECCCCCEEEECHHHHHCCCCEECCCCEEEEEECCEEE
NGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPINTKLKVIIIGDYETYNLLYNY
CCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEECC
DEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
CHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERI
CCCCCEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEE
FIDVKGDKVGQVNGLSVIDLGYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAI
EEEECCCCCCCCCCEEEEEECHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHH
STLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVAEAIAMLSALSNIPVRQSIAV
HHHHHHHHHHHCCCCCCEEEEEEEHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
TGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEDAIKN
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCHHHHHHHC
GEFSIYTMETLEDAVKMLLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL
CCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLRKIESKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKSGYNLYLVDDFSKE
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCCHH
KLNSIINFINQKLEKKSKPKDICYVVLEEERYPYSIYLENGKGKILKEKLKDIQTKYNEC
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
IYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGFEIKTGVSGFVFMPIKDGNSL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCC
SESEYEDLNKEDKEEILEKVSKLKEKAESSLEVLADMEREGLEKLKDIMRTYLEMEMKGS
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KEEYRMEFEDNIQTLDFLNSVCRNIEKELIESYTSSYEEDQESIINVIYKYKVNVIVDNT
HHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC
LNKSPLVIFEENPSVNNLVGSIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFT
CCCCCEEEECCCCCCCCEEEEEEECCCCCEEEECHHHHHCCCCEECCCCEEEEEECCEEE
NGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPINTKLKVIIIGDYETYNLLYNY
CCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEECC
DEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
CHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERI
CCCCCEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEE
FIDVKGDKVGQVNGLSVIDLGYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAI
EEEECCCCCCCCCCEEEEEECHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHH
STLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVAEAIAMLSALSNIPVRQSIAV
HHHHHHHHHHHCCCCCCEEEEEEEHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
TGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEDAIKN
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCHHHHHHHC
GEFSIYTMETLEDAVKMLLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL
CCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]