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The map label for this gene is yecS [H]

Identifier: 226948691

GI number: 226948691

Start: 1650636

End: 1651295

Strand: Direct

Name: yecS [H]

Synonym: CLM_1589

Alternate gene names: 226948691

Gene position: 1650636-1651295 (Clockwise)

Preceding gene: 226948690

Following gene: 226948692

Centisome position: 39.72

GC content: 29.09

Gene sequence:

>660_bases
ATGGAACTTAATTTTGATATTATTTTTAGAAATTTACCATTCTTATTAAAGGCTACGTTAGTAACTATAAAAATAACTTT
ACTTTCTTTTATTGTGGCTATAACATTAGCTGTTATTGTTGGGATTTTAAGAACTTATAAATTTTCCAAAATACTAGACC
TTATATTAAATGCATATGTAGAGATTTTTAGAGGATCTCCACTGCTTATACAATTATTTTTTATATATTATGGATTACCT
AGTGTTGGAATAGCTATGGATGCAGAAGTAGCTGCTGTTATAGGATTAGCACTGAATGGAGCTGCTTATATGTCAGAAAT
TATAAGAGCAGCTATAATTTCTATAGATAGAGGGCAGGAAGAGGCTGGTTTTTCTTTGGGATATACAAGATTTCAAAATT
TACACTATATAATATTACCTCAAGCTGTCAAAATATCTGTACCTCCATTAGTAAATGGTTTTTCATCACTTTTGAAAGAT
ACATCCTTGGTATCCGTTATTTCTATAACAGAACTGACAAGAAGTGGAAATCTTATATATTCGAGAACAGCTAAACCATT
TGAAGTATACTTAACTTTGGGACTATTTTATTTTGTGTTAACTTATATAGTTTCCATATGCTCAAAATTTATAGAAAAGA
GAAATGAGAAGTGGAATTAG

Upstream 100 bases:

>100_bases
GATGACTTAACAAAAGAGTTAAATAAAGCGCTAAAAAAAGTAAAAGAAGATGGTAAATATGAAGAGATTAAAAATAAGTG
GTTAAGTTTAAAGAAATAAT

Downstream 100 bases:

>100_bases
ATAAAATAAGTGGGTTTATTTGTTTACAAAATTTTAATTAAATATTTATTATGTATTTGATTATTTCGCAGCTAAAAGCT
GCTTTTTCTTTTGTAATTTT

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAVIVGILRTYKFSKILDLILNAYVEIFRGSPLLIQLFFIYYGLP
SVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQEEAGFSLGYTRFQNLHYIILPQAVKISVPPLVNGFSSLLKD
TSLVSVISITELTRSGNLIYSRTAKPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN

Sequences:

>Translated_219_residues
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAVIVGILRTYKFSKILDLILNAYVEIFRGSPLLIQLFFIYYGLP
SVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQEEAGFSLGYTRFQNLHYIILPQAVKISVPPLVNGFSSLLKD
TSLVSVISITELTRSGNLIYSRTAKPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN
>Mature_219_residues
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAVIVGILRTYKFSKILDLILNAYVEIFRGSPLLIQLFFIYYGLP
SVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQEEAGFSLGYTRFQNLHYIILPQAVKISVPPLVNGFSSLLKD
TSLVSVISITELTRSGNLIYSRTAKPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=220, Percent_Identity=40.9090909090909, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787030, Length=216, Percent_Identity=32.4074074074074, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=32.8828828828829, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1786874, Length=235, Percent_Identity=26.3829787234043, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=31.7972350230415, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788646, Length=211, Percent_Identity=28.436018957346, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787087, Length=224, Percent_Identity=29.4642857142857, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI87082239, Length=176, Percent_Identity=34.6590909090909, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788645, Length=204, Percent_Identity=27.9411764705882, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI48994930, Length=205, Percent_Identity=26.3414634146341, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24505; Mature: 24505

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAVIVGILRTYKFSKILDLILNAYV
CCCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIFRGSPLLIQLFFIYYGLPSVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQE
HHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
EAGFSLGYTRFQNLHYIILPQAVKISVPPLVNGFSSLLKDTSLVSVISITELTRSGNLIY
CCCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SRTAKPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MELNFDIIFRNLPFLLKATLVTIKITLLSFIVAITLAVIVGILRTYKFSKILDLILNAYV
CCCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIFRGSPLLIQLFFIYYGLPSVGIAMDAEVAAVIGLALNGAAYMSEIIRAAIISIDRGQE
HHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
EAGFSLGYTRFQNLHYIILPQAVKISVPPLVNGFSSLLKDTSLVSVISITELTRSGNLIY
CCCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SRTAKPFEVYLTLGLFYFVLTYIVSICSKFIEKRNEKWN
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]