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The map label for this gene is yulB [H]

Identifier: 226948538

GI number: 226948538

Start: 1484611

End: 1485405

Strand: Direct

Name: yulB [H]

Synonym: CLM_1430

Alternate gene names: 226948538

Gene position: 1484611-1485405 (Clockwise)

Preceding gene: 226948537

Following gene: 226948539

Centisome position: 35.73

GC content: 28.55

Gene sequence:

>795_bases
ATGAAACTTAAACCTGAAATTAGAAGAGAAAAGATATTAGCAGAAATAGAAAAAAATAAAACTGTGGATATAATGGAATT
AAGTGAAAAATTACAGGTATCAGAAATGACTATAAGAAGAGACTTAAAAAGATTAGAAAGCAGTGAAAAACTACTTAGAA
CCTATGGAGGAGCTACTCGTATATCTGAAGGAGAATGTAAAAAAGTTATAGATGATCCCTTAAAGGGTAGAGTATTAAAA
AATAAAGATGAAAAGGCTATTATAGGTAAATATGCAGGGGAATTAGTAGAAAATGATGATGTTATTATGATAGATGCTAG
TACTACAGCCTTAGCAATATGTAAATATATAAGAGATAAAAAGATAACAGTAGTTACAAATTCTATAAGTGTAGTAACAG
CCTTAGCTTCTTTTGATAATATAACGGTGGTAGTAGCCTGTGGAATATTACGACATAGTTCTTTATCTTTAGTAGGCTCC
TATGTAGAAGAATCTTTTAAAAAGTTTAATATAAACAAATCTTTTATATCAGCCAAGGCCTTGTCCTTTGAAGCAGGACT
TACAGATATAAATGCTTTTGAAGTAGAAACAAAAAAGGCTGCTATGTCTGTAAGTAAAGAGGTTATAGTTCTTTTAGATC
ACTCTAAACTTAATAATATATCCCTTTTAAAGGTTTGTGAAACAAAAGAAATAAGTAAAATAATAATAGACGGACTTAAG
GAGTTTACAGTGGAAGAAGAAGAATTATTAAATAAATTTAAATCTAATGGTATAGAAGTAATAATAGCTAAATGA

Upstream 100 bases:

>100_bases
TTTGTAAAAAGTGGTGTCATGTACAAGTTATACTATAACTTAATGGTATTTTGTTTTATAATTAATTATAAAATAAAAAT
ATTAGGAATAGGTGGGAAAT

Downstream 100 bases:

>100_bases
TGTAGATATACTTTTTAGCATTTATGTTTGAAAAAGATATATGTATTTTATCTAAATATAAAGATAAGATGGGAACACAT
ATTAAGATATATAAATGCCT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKLKPEIRREKILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATRISEGECKKVIDDPLKGRVLK
NKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDKKITVVTNSISVVTALASFDNITVVVACGILRHSSLSLVGS
YVEESFKKFNINKSFISAKALSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
EFTVEEEELLNKFKSNGIEVIIAK

Sequences:

>Translated_264_residues
MKLKPEIRREKILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATRISEGECKKVIDDPLKGRVLK
NKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDKKITVVTNSISVVTALASFDNITVVVACGILRHSSLSLVGS
YVEESFKKFNINKSFISAKALSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
EFTVEEEELLNKFKSNGIEVIIAK
>Mature_264_residues
MKLKPEIRREKILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATRISEGECKKVIDDPLKGRVLK
NKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDKKITVVTNSISVVTALASFDNITVVVACGILRHSSLSLVGS
YVEESFKKFNINKSFISAKALSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
EFTVEEEELLNKFKSNGIEVIIAK

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=238, Percent_Identity=32.7731092436975, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1789519, Length=257, Percent_Identity=28.7937743190661, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788069, Length=231, Percent_Identity=31.1688311688312, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI226510968, Length=240, Percent_Identity=31.6666666666667, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1790753, Length=263, Percent_Identity=24.3346007604563, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789829, Length=243, Percent_Identity=24.2798353909465, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789170, Length=234, Percent_Identity=29.0598290598291, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082344, Length=258, Percent_Identity=21.3178294573643, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787063, Length=242, Percent_Identity=26.4462809917355, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787540, Length=232, Percent_Identity=24.1379310344828, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790635, Length=258, Percent_Identity=24.4186046511628, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29445; Mature: 29445

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKPEIRREKILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATR
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ISEGECKKVIDDPLKGRVLKNKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDK
CCCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCC
KITVVTNSISVVTALASFDNITVVVACGILRHSSLSLVGSYVEESFKKFNINKSFISAKA
EEEEEECCHHHHHHHHCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
LSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
EEEECCCCCCCEEEEHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHH
EFTVEEEELLNKFKSNGIEVIIAK
HHCCCHHHHHHHHHCCCEEEEEEC
>Mature Secondary Structure
MKLKPEIRREKILAEIEKNKTVDIMELSEKLQVSEMTIRRDLKRLESSEKLLRTYGGATR
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ISEGECKKVIDDPLKGRVLKNKDEKAIIGKYAGELVENDDVIMIDASTTALAICKYIRDK
CCCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCC
KITVVTNSISVVTALASFDNITVVVACGILRHSSLSLVGSYVEESFKKFNINKSFISAKA
EEEEEECCHHHHHHHHCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
LSFEAGLTDINAFEVETKKAAMSVSKEVIVLLDHSKLNNISLLKVCETKEISKIIIDGLK
EEEECCCCCCCEEEEHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHH
EFTVEEEELLNKFKSNGIEVIIAK
HHCCCHHHHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]