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The map label for this gene is sdhB [H]

Identifier: 226948481

GI number: 226948481

Start: 1433434

End: 1434108

Strand: Direct

Name: sdhB [H]

Synonym: CLM_1369

Alternate gene names: 226948481

Gene position: 1433434-1434108 (Clockwise)

Preceding gene: 226948480

Following gene: 226948482

Centisome position: 34.5

GC content: 33.19

Gene sequence:

>675_bases
ATGAAGGATTATAGTGTGTTTGATGTAATAGGGCCAATTATGATAGGACCTTCTAGTTCACATACTGCAGGGGCGGCTAG
ACTCGCTAAAGTAGCTTGTTCTATAGCAGGAGATAATAATATAGAAGAGGTTAAGTTTTATTTACATGGATCTTTTGCTA
AGACTTATAAGGGACATGGAACAGATAAAGCTTTAATAGCAGGTATGTTAAATATGGACCCCTGGGATGAAAATCTTAGA
AAATCTTTTGAAATAGCGCAGAGGAACGGTTTAAAATATGAATTTATAGAAACAGATTTAGGGGATGCACATCCTAATAC
TGTTAAATTTGTTATTAAGAAAACTGATGGCGCTGTATCAGAAATTATAGGCTCTTCTATAGGTGGTGGAAATATAGTCA
TAACATCTATAGATGGTCAATCCATGGAATTTACCGGCAGTAATCCTACTATTGTAACACATCATAAAGATGTGCCAGGG
ATAATATCACAAATTAGCACAATGATGTATTCAGAAGGCATAAATATTGGAGCTATGAAAGTTTTTAGAGAAGGTAAAGG
TACAACTGCAACTATGACTTTTGAAACAGATGGAGAAATACCAAAGAAAATAATAGATGAAATAAAAGCTATTAAGGATA
TAGAGAATGTAAAAATCATAAATCCAATAAAATAG

Upstream 100 bases:

>100_bases
ATAGAATGAATATTCTAATTTAAGTAAGTACATATAGTTAATTATACATAATTTTATTTTAAATATAAAGGTTTACATAG
GTTTTAAGGAGGAAAAACTA

Downstream 100 bases:

>100_bases
GAGGAAAAATTAATGTTCGTAAACACAGGAAAAGAACTTATAAGAGTATGTGATGAAAAAAAATTAAAAATATGGGAATA
TACTTTAAAAATAGAAGCAG

Product: L-serine dehydratase, iron-sulfur-dependent subunit beta

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKDYSVFDVIGPIMIGPSSSHTAGAARLAKVACSIAGDNNIEEVKFYLHGSFAKTYKGHGTDKALIAGMLNMDPWDENLR
KSFEIAQRNGLKYEFIETDLGDAHPNTVKFVIKKTDGAVSEIIGSSIGGGNIVITSIDGQSMEFTGSNPTIVTHHKDVPG
IISQISTMMYSEGINIGAMKVFREGKGTTATMTFETDGEIPKKIIDEIKAIKDIENVKIINPIK

Sequences:

>Translated_224_residues
MKDYSVFDVIGPIMIGPSSSHTAGAARLAKVACSIAGDNNIEEVKFYLHGSFAKTYKGHGTDKALIAGMLNMDPWDENLR
KSFEIAQRNGLKYEFIETDLGDAHPNTVKFVIKKTDGAVSEIIGSSIGGGNIVITSIDGQSMEFTGSNPTIVTHHKDVPG
IISQISTMMYSEGINIGAMKVFREGKGTTATMTFETDGEIPKKIIDEIKAIKDIENVKIINPIK
>Mature_224_residues
MKDYSVFDVIGPIMIGPSSSHTAGAARLAKVACSIAGDNNIEEVKFYLHGSFAKTYKGHGTDKALIAGMLNMDPWDENLR
KSFEIAQRNGLKYEFIETDLGDAHPNTVKFVIKKTDGAVSEIIGSSIGGGNIVITSIDGQSMEFTGSNPTIVTHHKDVPG
IISQISTMMYSEGINIGAMKVFREGKGTTATMTFETDGEIPKKIIDEIKAIKDIENVKIINPIK

Specific function: Unknown

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 24241; Mature: 24241

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDYSVFDVIGPIMIGPSSSHTAGAARLAKVACSIAGDNNIEEVKFYLHGSFAKTYKGHG
CCCCCHHHHHCCEEECCCCCCCHHHHHHHHHHHHHCCCCCHHEEEEEEECCHHHHHCCCC
TDKALIAGMLNMDPWDENLRKSFEIAQRNGLKYEFIETDLGDAHPNTVKFVIKKTDGAVS
CCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCHHH
EIIGSSIGGGNIVITSIDGQSMEFTGSNPTIVTHHKDVPGIISQISTMMYSEGINIGAMK
HHHCCCCCCCEEEEEEECCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHE
VFREGKGTTATMTFETDGEIPKKIIDEIKAIKDIENVKIINPIK
EEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCC
>Mature Secondary Structure
MKDYSVFDVIGPIMIGPSSSHTAGAARLAKVACSIAGDNNIEEVKFYLHGSFAKTYKGHG
CCCCCHHHHHCCEEECCCCCCCHHHHHHHHHHHHHCCCCCHHEEEEEEECCHHHHHCCCC
TDKALIAGMLNMDPWDENLRKSFEIAQRNGLKYEFIETDLGDAHPNTVKFVIKKTDGAVS
CCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCHHH
EIIGSSIGGGNIVITSIDGQSMEFTGSNPTIVTHHKDVPGIISQISTMMYSEGINIGAMK
HHHCCCCCCCEEEEEEECCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHE
VFREGKGTTATMTFETDGEIPKKIIDEIKAIKDIENVKIINPIK
EEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9244285; 2065681 [H]