| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is yhdW [H]
Identifier: 226948458
GI number: 226948458
Start: 1401934
End: 1403820
Strand: Direct
Name: yhdW [H]
Synonym: CLM_1343
Alternate gene names: 226948458
Gene position: 1401934-1403820 (Clockwise)
Preceding gene: 226948457
Following gene: 226948459
Centisome position: 33.74
GC content: 30.84
Gene sequence:
>1887_bases ATGACAACGAGAATGGAGACAAGGCATAGTAAACCGATATCCACATTAAAAATGATAAGAAAAAATTTCACCTATTTTAA AAAGAGTTTTTTTGTAAATATTGGATTTGAATCGATATACAAAGTGTTGACAAGCTTTATATTTCTCCCATTTATTACAA TGGTGCTAAATTATTTTATGCATCTAAGAGGGATGAAGATGATGGCAAATAACCAGATATTAACTTTTGCAAGAAGTATT CCAGGAATTTTGACAATTTTAATTTTAGGAATTCTTAGCTTTTTCTTTATTTTTATAGAATATGCAGGACTTATTGTAAT ATCACAGGAAACATATTTTGATAAAAAGATTTCAGCAAAAGCATCTTTTTTTACAGCAATGAAAAGTATTAGAGGTATTA TAAAAATAGGCTCTATTCCAATTATAATATATGTTCTTTTTATTATTCCTTTTGTAGCTAGTTCAATAGGGTTGTCTTCA AGTTTACTCCCGAAGATTGAAATACCAGCCTTTATTATGGATGTAGTATACAAAACACCAAAATGGATAGGTTTATATGC AATTGTATTTTTTGTACTATTCTATTTTTTAATTAGATGGATTTTTTCATTGCACGTTGTAGTATTGGAAGGAAAGGATT TCTCAAGTGCATTAAAGAGAAGTTCGCAGCTCGTAAAAGGATCTTTTCTTAAGATTTGGACTACTATGTTTTTGTGGAAC TTAAGTATTTTTGCTATTGTAGCAGTAGTAGCGATTTTAGTGGGAATTGGTATGGCGCTTTTAAATGAAGTACTAAAAGG AAATGTGAAACTATTTGTAACTATTCTTTCCTTTGTTACAACAATGGGTGGAATATTAGTCATGATAGCTACTTTATTTA TTTCTCCGCTTACTATTATGTTGATTACTCAATTGTATTATAGACAAGTAAAAATGAAAGATGGTGTAGAACCAATACCC ATGATTATTACAGCAACACCAAGCAAAATAAACTGGCAAAATCTATTTAATCGACATAAGAAAAAGCTAATAGCAGTTAG TGTGCTAGGAATAATGATATTTACATGGCTTTCCTATGTTTATTTTATTACTTATGAGTTTGATGCTAATAACAACTTGG TTACTGTTACCGCTCACAGGGGAGATGCTGTTAATGCACCAGATAACACTATGAGTTCACTTTTAGGTGCTATTGCCAAC AAAGCAGATTATAGTGAGCTGGACGTACAGCAAACAAAGGATGGAATGGTAGTTTTAACCCACGATACCAATTTAAAGAA CAATACAGGGGTAAACAAAAATATTTGGGAATTGACCTTTGATGAAGTAGAAAAATTAGATGTGGGAAGTCATTTTTCAC CTAAGTTTGATGGCGAGAAAATTCCGACTTTGGACAGCATTATGAAAGCAGCCAATAAAAAGATAAAGCTAAATATAGAG ATTAAACTGAATGGACATGATCAAAAGCTAGAAGAAAAGGTGGTAAAGCTTATAGAGGACAATAATTTTGTAGATCAATG CGTAGTTACGTCCTTAGATTATAATGCTTTGCAAAAGGTAAAAAAATTAAATCCTAAAATCAAGGTGGGATATATTGTAT TTGCAGGTATGGGAGATGTTACTGCATTGAATGTTGACTTCTTAAGTGTAGAAGAAGCCGTTGCAACGCCAGAATTTATT GAGAAAGTGCATAAAAATAATAAGAGGATTCATGTTTGGACAATAAATGATCCCGAAAAAATGGAAAAGTTTATAGATTT ACAAGTAGATAGTATTATTACAGATGACTCAAAAGAAGTAACAAGGTTAATTGAGGAGAAAAAAGATAAGCAGCTTAGAA ATGAAATAGATTATATTTACAAGATTGTAGCGTTATTTAATAACTAG
Upstream 100 bases:
>100_bases AATGCTTGTTATTATATAAGAAAAACATAATAATGTATGTTAATTTTAGCGGTATTTATTGTAGCTGAATTGAAAAAGAA AATGTAAAGGGGACAGATCA
Downstream 100 bases:
>100_bases ATAAAGCTTTAAAATTTCTGAATTATTTGTTATATACGAAAAAAGGAGAAGTGTTAATAAAAGTCACGATGAACTTATTT AGTCCTTAGAAAGAAGTTTA
Product: glycerophosphoryl diester phosphodiesterase family protein
Products: NA
Alternate protein names: Glycerophosphodiester phosphodiesterase [H]
Number of amino acids: Translated: 628; Mature: 627
Protein sequence:
>628_residues MTTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFMHLRGMKMMANNQILTFARSI PGILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAKASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSS SLLPKIEIPAFIMDVVYKTPKWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWN LSIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIMLITQLYYRQVKMKDGVEPIP MIITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYVYFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIAN KADYSELDVQQTKDGMVVLTHDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIE IKLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDVTALNVDFLSVEEAVATPEFI EKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEVTRLIEEKKDKQLRNEIDYIYKIVALFNN
Sequences:
>Translated_628_residues MTTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFMHLRGMKMMANNQILTFARSI PGILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAKASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSS SLLPKIEIPAFIMDVVYKTPKWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWN LSIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIMLITQLYYRQVKMKDGVEPIP MIITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYVYFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIAN KADYSELDVQQTKDGMVVLTHDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIE IKLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDVTALNVDFLSVEEAVATPEFI EKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEVTRLIEEKKDKQLRNEIDYIYKIVALFNN >Mature_627_residues TTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFMHLRGMKMMANNQILTFARSIP GILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAKASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSSS LLPKIEIPAFIMDVVYKTPKWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWNL SIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIMLITQLYYRQVKMKDGVEPIPM IITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYVYFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIANK ADYSELDVQQTKDGMVVLTHDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIEI KLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDVTALNVDFLSVEEAVATPEFIE KVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEVTRLIEEKKDKQLRNEIDYIYKIVALFNN
Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]
COG id: COG0584
COG function: function code C; Glycerophosphoryl diester phosphodiesterase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GDPD domain [H]
Homologues:
Organism=Homo sapiens, GI146198640, Length=170, Percent_Identity=26.4705882352941, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI260763878, Length=158, Percent_Identity=34.8101265822785, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI260763880, Length=158, Percent_Identity=34.8101265822785, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI260763876, Length=260, Percent_Identity=25.3846153846154, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI7706617, Length=129, Percent_Identity=31.7829457364341, Blast_Score=74, Evalue=3e-13, Organism=Escherichia coli, GI1789858, Length=231, Percent_Identity=25.974025974026, Blast_Score=77, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17542344, Length=166, Percent_Identity=27.710843373494, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004129 - InterPro: IPR017946 [H]
Pfam domain/function: PF03009 GDPD [H]
EC number: =3.1.4.46 [H]
Molecular weight: Translated: 71530; Mature: 71399
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFM CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHH HLRGMKMMANNQILTFARSIPGILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAK HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHH ASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSSSLLPKIEIPAFIMDVVYKTP HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC KWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWN CHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LSIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIM HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LITQLYYRQVKMKDGVEPIPMIITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYV HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIANKADYSELDVQQTKDGMVVLT EEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHCCHHHCCCCEEEEE HDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIE ECCCCCCCCCCCCCHHHEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEE IKLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDV EEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCE TALNVDFLSVEEAVATPEFIEKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEV EEEEEEHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHH TRLIEEKKDKQLRNEIDYIYKIVALFNN HHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTRMETRHSKPISTLKMIRKNFTYFKKSFFVNIGFESIYKVLTSFIFLPFITMVLNYFM CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHH HLRGMKMMANNQILTFARSIPGILTILILGILSFFFIFIEYAGLIVISQETYFDKKISAK HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHH ASFFTAMKSIRGIIKIGSIPIIIYVLFIIPFVASSIGLSSSLLPKIEIPAFIMDVVYKTP HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC KWIGLYAIVFFVLFYFLIRWIFSLHVVVLEGKDFSSALKRSSQLVKGSFLKIWTTMFLWN CHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LSIFAIVAVVAILVGIGMALLNEVLKGNVKLFVTILSFVTTMGGILVMIATLFISPLTIM HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LITQLYYRQVKMKDGVEPIPMIITATPSKINWQNLFNRHKKKLIAVSVLGIMIFTWLSYV HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFITYEFDANNNLVTVTAHRGDAVNAPDNTMSSLLGAIANKADYSELDVQQTKDGMVVLT EEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHCCHHHCCCCEEEEE HDTNLKNNTGVNKNIWELTFDEVEKLDVGSHFSPKFDGEKIPTLDSIMKAANKKIKLNIE ECCCCCCCCCCCCCHHHEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEE IKLNGHDQKLEEKVVKLIEDNNFVDQCVVTSLDYNALQKVKKLNPKIKVGYIVFAGMGDV EEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCE TALNVDFLSVEEAVATPEFIEKVHKNNKRIHVWTINDPEKMEKFIDLQVDSIITDDSKEV EEEEEEHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHH TRLIEEKKDKQLRNEIDYIYKIVALFNN HHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]