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The map label for this gene is ydeL [H]

Identifier: 226947891

GI number: 226947891

Start: 800545

End: 801954

Strand: Reverse

Name: ydeL [H]

Synonym: CLM_0747

Alternate gene names: 226947891

Gene position: 801954-800545 (Counterclockwise)

Preceding gene: 226947897

Following gene: 226947890

Centisome position: 19.3

GC content: 45.18

Gene sequence:

>1410_bases
ATGCTGTACATTGATCGTGGAAGCAATATACCGATATATCAGCAAATTTATGAACAAATGAAACGGGACATTATAAGCGG
AAATTTACCTGTGGAATCACGCGTCATCTCCACACGAGTGCTGGCCAGCGAATTGCAGGTCGGCAGAAACTCGGTAGAAA
ATGCCTATGATCAACTTAGGTTGGAAGGATATATCACGAGTATACCGGGGTCTGGGTATATCGTGAACAAGTTGGAGTTT
GATTTGATTCAGGAATCATCCAAGGAGCAACAGCAAAGCAAGCTGTTGACAGAACATCTCGCCGTGCTCCCCGATAAAAT
CAAATACAGCTTTCAATATGGCGAGCTTGATAAAACCAATTTTCCAAAGAAGCTCTGGCGGATGTATGTGGCGAACGTTC
TGGATGAACCGCTGGCACATTCAATGCACAGTTACGGAGATGGGAAAGGTGATCCTCAGTTGCGCCAGCAGATAAAGCAA
TATCTTTATCACAGCCGGGGAGTACAATGCGAAACAGAACAGATTATCCTTTGCAGCGGTACGCAGTCTGCATTGGAGAC
CATTATAAGAATTTTTTCGGGCAAGAAAACCGTAGCGATGGAAGAACCATGTTATGACGGTGCAAGAGCAGTATTTCAAA
GCAACGGCTTTAAAATATTGCCTGTTCCAGTTCGTGAAGATGGCATTGATTTACAAAAACTTTCGTCACAATCGATTCCG
ATGGTTTATCTCTCTCCCTCACACCAGTTCCCGACAGGCGCGGTTATGCCTATTCATAACCGGATGAAGGTATTAAATCT
TGCACGCCAGCGAGACATGATGATTATTGAGGATGACTACGACAGCGAGTTTCGATACAAGGGAAGACCCATTCCGTCAC
TGCAATCTATCGATCAAGCTGAGCGCGTGATCTATATTGGGACTTTTTCTAAGGCTTTATCACCGGGGCTGCGAATATCC
TACTTGGTGTTGCCAACTTGGCTATTAGCTGCTTATCAGGAGAAATACAGAGGGTATCAATGCACGATTCCGCTGATTGA
GCAAAAGGTACTCCTGCATTTCATGCAAGACGGGCATTGGGAAAAACATATCCGCAGAGTTTGCCTGAGTCAGAAAAGAA
AGCATGATACCCTGATTGCCGCTATCCATCAGATCATAGGCGACCGAGTTCGGGTTTACGGTCATCATGCTGGATTGCAC
ATATTACTTGAGTTTGTGGATGGACAGCAAGAGGACACTCTTGTACAAAAAGCTATGCGGTATGGTGTTCAGGTGCGCCC
GGTATCTCCGTTCTGGCTGGAAAAGGGCCGTTATTCGGGCAATGCTGTCGTGCTGGGATATGGAAAGATAAAAGAAAAAG
ATATTGTACCTGCGGTAGAGCTTTTAAACAAGGCATGGTTTGAAGAGTGA

Upstream 100 bases:

>100_bases
TAAGTGTCTTATAGCATGGAGACGATTTAGAACATTTTATAGGATACAGTTGTTTTTAATTGTGTTATAATAATAGAAAA
AATTGTGAGGAGGGTGAAAG

Downstream 100 bases:

>100_bases
ATAGAACCGCATACACCGGCGTTTTTATAACTGAAACTTTTAAAACAGAAGCTTGCTGTACCTCGAATTGAATATCCAAA
ATTGAGAAGAAAGTTATCAA

Product: GntR family transcriptional regulator/aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLRLEGYITSIPGSGYIVNKLEF
DLIQESSKEQQQSKLLTEHLAVLPDKIKYSFQYGELDKTNFPKKLWRMYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQ
YLYHSRGVQCETEQIILCSGTQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
MVYLSPSHQFPTGAVMPIHNRMKVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQAERVIYIGTFSKALSPGLRIS
YLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHWEKHIRRVCLSQKRKHDTLIAAIHQIIGDRVRVYGHHAGLH
ILLEFVDGQQEDTLVQKAMRYGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE

Sequences:

>Translated_469_residues
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLRLEGYITSIPGSGYIVNKLEF
DLIQESSKEQQQSKLLTEHLAVLPDKIKYSFQYGELDKTNFPKKLWRMYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQ
YLYHSRGVQCETEQIILCSGTQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
MVYLSPSHQFPTGAVMPIHNRMKVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQAERVIYIGTFSKALSPGLRIS
YLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHWEKHIRRVCLSQKRKHDTLIAAIHQIIGDRVRVYGHHAGLH
ILLEFVDGQQEDTLVQKAMRYGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE
>Mature_469_residues
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLRLEGYITSIPGSGYIVNKLEF
DLIQESSKEQQQSKLLTEHLAVLPDKIKYSFQYGELDKTNFPKKLWRMYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQ
YLYHSRGVQCETEQIILCSGTQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
MVYLSPSHQFPTGAVMPIHNRMKVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQAERVIYIGTFSKALSPGLRIS
YLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHWEKHIRRVCLSQKRKHDTLIAAIHQIIGDRVRVYGHHAGLH
ILLEFVDGQQEDTLVQKAMRYGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=397, Percent_Identity=22.9219143576826, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI33469970, Length=397, Percent_Identity=22.9219143576826, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1790797, Length=370, Percent_Identity=25.9459459459459, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787710, Length=449, Percent_Identity=23.6080178173719, Blast_Score=96, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6321236, Length=260, Percent_Identity=24.2307692307692, Blast_Score=76, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321929, Length=247, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53838; Mature: 53838

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLR
CEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LEGYITSIPGSGYIVNKLEFDLIQESSKEQQQSKLLTEHLAVLPDKIKYSFQYGELDKTN
EEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCC
FPKKLWRMYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQYLYHSRGVQCETEQIILCSG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
TQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCC
MVYLSPSHQFPTGAVMPIHNRMKVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQA
EEEECCCCCCCCCCEECCHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCCCHHHHCCC
ERVIYIGTFSKALSPGLRISYLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHW
CEEEEEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCH
EKHIRRVCLSQKRKHDTLIAAIHQIIGDRVRVYGHHAGLHILLEFVDGQQEDTLVQKAMR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHH
YGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE
CCCEEECCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYIDRGSNIPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLR
CEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LEGYITSIPGSGYIVNKLEFDLIQESSKEQQQSKLLTEHLAVLPDKIKYSFQYGELDKTN
EEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCC
FPKKLWRMYVANVLDEPLAHSMHSYGDGKGDPQLRQQIKQYLYHSRGVQCETEQIILCSG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
TQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCC
MVYLSPSHQFPTGAVMPIHNRMKVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQA
EEEECCCCCCCCCCEECCHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCCCHHHHCCC
ERVIYIGTFSKALSPGLRISYLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHW
CEEEEEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCH
EKHIRRVCLSQKRKHDTLIAAIHQIIGDRVRVYGHHAGLHILLEFVDGQQEDTLVQKAMR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHH
YGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE
CCCEEECCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]