| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is yoaA [C]
Identifier: 226947754
GI number: 226947754
Start: 652749
End: 655103
Strand: Direct
Name: yoaA [C]
Synonym: CLM_0603
Alternate gene names: 226947754
Gene position: 652749-655103 (Clockwise)
Preceding gene: 226947753
Following gene: 226947757
Centisome position: 15.71
GC content: 25.9
Gene sequence:
>2355_bases ATGGAATGTAAGGATGAAGTGAATATATCCGTTAGAAATTTAGTGGAGTTTATATTAAGAAACGGAGATATTGATATTGG ATATTTTGGGGGAAGCAGAGCTCAAGAAGGGATAAAAGCACATAAGAAGTTGCAAAAAATTAGGATGGAAAGTGCTACCC CTTTACTCATGATTGAATATGAGAAAGAAGTTTTATTAAAATATGCTATAGAATATAAAGACTTTTTATTTAAAGTAGAG GGAAGAGCAGATGGAATTATTATAGAGAATGACTCTATTACTATAGAAGAGATTAAGACTACAACTAAAAACTTGGATGA AATTAAAGATAATTTGCTGCACTGGGCTCAAGCTAAGTGTTACGCCTTTATTTATTCAAAGGAGAAAAATCTTGAAAAAA TTAATGTTAAATTAACTTATTATAATATTAAAAATGAAAACATTAAAAGTATGGATAAAACTTTTGAAATACAGGAATTA GAAGAATTTTTTTATGATATTATACATAAATATTATGTTTGGATAGAGTTTAATTATAAATTTAAGCAGGAAAGAAATAG GGACATTAAATTATTAAAGTTCCCCTTTAAAGAATATAGAGAAGGCCAAAGAAAATTAGCTGTATCTGTTTATAAGACTA TAAGTGAAAATAAAAATATATTTATAGAAGCTCCTACAGGTATAGGAAAAACTATCTCTACAATATTCCCTAGTGTTAAG GCTATAGGAGAAGGTAAAATAGATAAAATTTTTTATTTAACAGCTAAGAATACTACAAGAGATTTTGTTTTGAGCAATTT TAAAAATATGGTAAATAGGGGGATGGCTTTTAAAGTTATTACTTTAATTTCCAAGGAAAAGATTTGTCTTAAAGAGGAGT TTAAATGTTCACCGGAAAAGTGTGAGTTCGCTAAAGGTCATTTTGATAGAATAAATGAAGCTATATTAGATATTTTAAAT AATGAAAATATTATAGATGAAGCTGTTATTAAAAAATATGCCTTAAAACATAAAGTTTGTCCCTTTGAATTTTCTTTAGA TATAAGTTTATGGTGTGATGGGATAATCTGTGATTATAATTATGTTTTTGATCCTAGAGTATATTTAAGAAGATTTTTTT CTGATGGGAAGGATGATTTTGTATTACTAATAGATGAAGCTCATAATTTATTAGATAGATCTAGAGAAATGTTTTCCTCA TCTATATCTAAAAGTAATATTTTAAGTTTAAGAAAGTCTATTAAAGATAAAAGTAAAGTTTTATATAGAATTTTAGGAAA AATAAATAAAGAACTTTTAGATATAAAAAAAATATATGAAGTGGATAATTATTATATGGAAAAAGAAAAGCCAGAAAAGT TGCAAATATTATTAAATAATTTTACATCAGAGATTGAAGTGCTTATGATGAAAGGAAACTTTCAAATACATGATGAATTA CTTAATTTTTATTTTGAGGCTTTATATTTTCTAAAGATATGTGAATTATATGGAGATAATTATATAACCTATGGAGAAGA ATATAATAGTGATTTTACAATTAAACTTTTTGCTATAGATACTTCAGGTTTATTAAATGAAATTTTAAAAAAGTCAAAGG CAAACATATTTTTTTCAGGAACCTTTTCTCCTATAAAATATTTCAGAGAAGTCTTAGGAGGAGACGATGAAGATTATGTT TTAAAATTAAATTCTCCTTTTCCAATAGAAAACCATAGGATTTTGATAGGTTACAATGTTTCTACAAAATATAAAAATAG ATGCAAAAGCTATGAGAATATATGTGATTATATAAATATGGCCTGCAAAATAAAAAAAGGAAATTATATGGTTTTTTTCC CATCCTATAAATATATGAAAGAAGTTTTTTTATTATATAAAGAAAAATATCCAGAAGAGAATGTTATAGTTCAAAATTCT TCTATGAGTGATGAAGAGAGAGAAGAATTTATAGATAAATTTGAAAAAGAAACAGAAAATGTAATAGGTTTTTGTGTACT AGGTGGGATTTTTTCAGAAGGAATTGATTTAGCAGGGGATAAAATAATAGGAGCTATAATAATAGGAGTAGGATTACCAC AAATATGTGTAGAAAGAAATCTAATAAAGAATTATTATGATGATAAGAAACAGTCTGGCTTTCAGTATTCATATATTTAT CCAGGAATGACTAAAGTTATGCAGGCTGCTGGTAGGGTAATAAGAACAGAGATGGATAAAGGAATAATACTACTTATTGA TGAACGGTTTAATAGTTATTCTTATAAAGAGTTATTCCCTAAACACTGGTATCCTAATATTAAGGTGAAAAGTCAGAAGG AGTTAGAATTAGTATTAAAGGAATTTTGGAATTAA
Upstream 100 bases:
>100_bases TATCCAAAATAATAAAATGCAAATTTGTTATAAAAAAATAATTGATAGAAACTTATGATATAATTTGTATTAGTAAACTA TAATGAAAAGGTTGATTTAT
Downstream 100 bases:
>100_bases TATATTAAATGGATAAACCAATTAATTTTTATTAAACTTAAAGATTTATATTAAAAAATAATTAGAATACCTTATTTGTG TACTAATATATAAGTGTAAA
Product: putative ATP-dependent helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 784; Mature: 784
Protein sequence:
>784_residues MECKDEVNISVRNLVEFILRNGDIDIGYFGGSRAQEGIKAHKKLQKIRMESATPLLMIEYEKEVLLKYAIEYKDFLFKVE GRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKCYAFIYSKEKNLEKINVKLTYYNIKNENIKSMDKTFEIQEL EEFFYDIIHKYYVWIEFNYKFKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSVK AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSPEKCEFAKGHFDRINEAILDILN NENIIDEAVIKKYALKHKVCPFEFSLDISLWCDGIICDYNYVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSS SISKSNILSLRKSIKDKSKVLYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGNFQIHDEL LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSGTFSPIKYFREVLGGDDEDYV LKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINMACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNS SMSDEEREEFIDKFEKETENVIGFCVLGGIFSEGIDLAGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY PGMTKVMQAAGRVIRTEMDKGIILLIDERFNSYSYKELFPKHWYPNIKVKSQKELELVLKEFWN
Sequences:
>Translated_784_residues MECKDEVNISVRNLVEFILRNGDIDIGYFGGSRAQEGIKAHKKLQKIRMESATPLLMIEYEKEVLLKYAIEYKDFLFKVE GRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKCYAFIYSKEKNLEKINVKLTYYNIKNENIKSMDKTFEIQEL EEFFYDIIHKYYVWIEFNYKFKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSVK AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSPEKCEFAKGHFDRINEAILDILN NENIIDEAVIKKYALKHKVCPFEFSLDISLWCDGIICDYNYVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSS SISKSNILSLRKSIKDKSKVLYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGNFQIHDEL LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSGTFSPIKYFREVLGGDDEDYV LKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINMACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNS SMSDEEREEFIDKFEKETENVIGFCVLGGIFSEGIDLAGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY PGMTKVMQAAGRVIRTEMDKGIILLIDERFNSYSYKELFPKHWYPNIKVKSQKELELVLKEFWN >Mature_784_residues MECKDEVNISVRNLVEFILRNGDIDIGYFGGSRAQEGIKAHKKLQKIRMESATPLLMIEYEKEVLLKYAIEYKDFLFKVE GRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKCYAFIYSKEKNLEKINVKLTYYNIKNENIKSMDKTFEIQEL EEFFYDIIHKYYVWIEFNYKFKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSVK AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSPEKCEFAKGHFDRINEAILDILN NENIIDEAVIKKYALKHKVCPFEFSLDISLWCDGIICDYNYVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSS SISKSNILSLRKSIKDKSKVLYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGNFQIHDEL LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSGTFSPIKYFREVLGGDDEDYV LKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINMACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNS SMSDEEREEFIDKFEKETENVIGFCVLGGIFSEGIDLAGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY PGMTKVMQAAGRVIRTEMDKGIILLIDERFNSYSYKELFPKHWYPNIKVKSQKELELVLKEFWN
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI301897118, Length=265, Percent_Identity=24.1509433962264, Blast_Score=72, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 92246; Mature: 92246
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MECKDEVNISVRNLVEFILRNGDIDIGYFGGSRAQEGIKAHKKLQKIRMESATPLLMIEY CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC EKEVLLKYAIEYKDFLFKVEGRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKC HHHHHHHHHHHHHHEEEEECCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHE YAFIYSKEKNLEKINVKLTYYNIKNENIKSMDKTFEIQELEEFFYDIIHKYYVWIEFNYK EEEEEECCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE FKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSVK ECCCCCCCEEEEECCHHHHHCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSPEK HCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHCCCCCCH CEFAKGHFDRINEAILDILNNENIIDEAVIKKYALKHKVCPFEFSLDISLWCDGIICDYN HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECEEEECCC YVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSSSISKSNILSLRKSIKDKSKV EEECHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGNFQIHDEL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCEEHHHH LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSG HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEC TFSPIKYFREVLGGDDEDYVLKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINM CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC ACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNSSMSDEEREEFIDKFEKETEN EEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH VIGFCVLGGIFSEGIDLAGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHCCCEEEEEC PGMTKVMQAAGRVIRTEMDKGIILLIDERFNSYSYKELFPKHWYPNIKVKSQKELELVLK CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCCCEECCHHHHHHHHH EFWN HHCC >Mature Secondary Structure MECKDEVNISVRNLVEFILRNGDIDIGYFGGSRAQEGIKAHKKLQKIRMESATPLLMIEY CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC EKEVLLKYAIEYKDFLFKVEGRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKC HHHHHHHHHHHHHHEEEEECCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHE YAFIYSKEKNLEKINVKLTYYNIKNENIKSMDKTFEIQELEEFFYDIIHKYYVWIEFNYK EEEEEECCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE FKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSVK ECCCCCCCEEEEECCHHHHHCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSPEK HCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHCCCCCCH CEFAKGHFDRINEAILDILNNENIIDEAVIKKYALKHKVCPFEFSLDISLWCDGIICDYN HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECEEEECCC YVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSSSISKSNILSLRKSIKDKSKV EEECHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGNFQIHDEL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCEEHHHH LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSG HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEC TFSPIKYFREVLGGDDEDYVLKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINM CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC ACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNSSMSDEEREEFIDKFEKETEN EEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH VIGFCVLGGIFSEGIDLAGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHCCCEEEEEC PGMTKVMQAAGRVIRTEMDKGIILLIDERFNSYSYKELFPKHWYPNIKVKSQKELELVLK CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCCCEECCHHHHHHHHH EFWN HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11029001 [H]