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The map label for this gene is rpiR [C]

Identifier: 226947511

GI number: 226947511

Start: 330489

End: 331250

Strand: Direct

Name: rpiR [C]

Synonym: CLM_0345

Alternate gene names: 226947511

Gene position: 330489-331250 (Clockwise)

Preceding gene: 226947510

Following gene: 226947512

Centisome position: 7.95

GC content: 24.15

Gene sequence:

>762_bases
ATGGATATATCCAAGTTTATTCAAAATAAAGGGCTTACAGAAATAGAAATAGAAGTCCTTAATTATATGATAGATAATAT
TAATGATATAAATAAAATGGGAGTAAGAGGAGTAGCAAAAAACAACTTTACATCAACATCTACTATTATGAGATTAGCTA
AAAAACTTGGCTATTCTGGTTTTTTAGAAATGCAATATAATTTATTATCTTTAACTAAAAATGAATTAAAAGATAATTTA
AATGATAGTGGCTTTATAGAAAGTTTAAATATGGATAGTCTATTAGAAGAAAATAGTACAGAAGCAATTAATAATTTTAT
AGACATTTTATTTAATGACGATCATAAGTTTATTTTTATATATGCCAATGGTTTTTCTGGTATTGTAGCAGAATATATAA
ATAAGAAACTTCTAGTTATGGGTAAGAGGTGTATTTTGTCTAATGGAACAGATTCTATAGGAGTATTTGAAAATAATTTA
GATTTTATAAGTGCTATTATAGTAATATCTAAATCTGGAGAAACACCAATGGTATTAAATAAGGTTAAAACAGCAAAGGA
ACATAATATTAAGGTTATATCTTTTACAAATGAGCGGGAAAATAGCATAAGTAAGCTTTCTGATATAAGATTTAAGATTA
AAGATACCAATAAATTAGATGATAGAAATTTAATGCCAAACACATTTTTCCCAAAGGTACTAGTGTTAATAGAGTTATTA
GTATATGAATATTATAAAAAGAAAAATAGTAATGTTGAGTAA

Upstream 100 bases:

>100_bases
ATAAATAAAGAACTTAAAATTTATAGAGTTATATAAAAGGCTAGTAAAGTTTCTATCTAGTTACTGTATAATTTGGTAAA
TAATTTATGGAGGCAATGGA

Downstream 100 bases:

>100_bases
CGTGTTATCTAAAGAGGTAACACGTTTTTTACATAAGAAAATCTATATACATATAGATATCTAATTATTATAATGTGAAA
TGTAAATGGTTTCTCAAAAA

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: RpiR Family Transcriptional Regulator; Transcriptional Regulator RpiR Family; Sugar Isomerase; HTH-Type Transcriptional Regulator; SIS Domain Protein; RpiR-Family Transcriptional Regulator; RpiR Family Regulatory Protein; Regulator; SIS Domain-Containing Protein

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSGFLEMQYNLLSLTKNELKDNL
NDSGFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFIYANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNL
DFISAIIVISKSGETPMVLNKVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
VYEYYKKKNSNVE

Sequences:

>Translated_253_residues
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSGFLEMQYNLLSLTKNELKDNL
NDSGFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFIYANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNL
DFISAIIVISKSGETPMVLNKVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
VYEYYKKKNSNVE
>Mature_253_residues
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSGFLEMQYNLLSLTKNELKDNL
NDSGFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFIYANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNL
DFISAIIVISKSGETPMVLNKVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
VYEYYKKKNSNVE

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28888; Mature: 28888

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSG
CCHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC
FLEMQYNLLSLTKNELKDNLNDSGFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFI
EEHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHCCCHHHHHHHHHEEECCCCCEEEE
YANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNLDFISAIIVISKSGETPMVLN
EECCCHHHHHHHHCCCEEECCCHHEECCCCCCCEEEECCHHHEEEEEEEECCCCCCHHHH
KVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
HHHHHHHCCEEEEEECCCHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
VYEYYKKKNSNVE
HHHHHHHCCCCCC
>Mature Secondary Structure
MDISKFIQNKGLTEIEIEVLNYMIDNINDINKMGVRGVAKNNFTSTSTIMRLAKKLGYSG
CCHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC
FLEMQYNLLSLTKNELKDNLNDSGFIESLNMDSLLEENSTEAINNFIDILFNDDHKFIFI
EEHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHCCCHHHHHHHHHEEECCCCCEEEE
YANGFSGIVAEYINKKLLVMGKRCILSNGTDSIGVFENNLDFISAIIVISKSGETPMVLN
EECCCHHHHHHHHCCCEEECCCHHEECCCCCCCEEEECCHHHEEEEEEEECCCCCCHHHH
KVKTAKEHNIKVISFTNERENSISKLSDIRFKIKDTNKLDDRNLMPNTFFPKVLVLIELL
HHHHHHHCCEEEEEECCCHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
VYEYYKKKNSNVE
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA