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The map label for this gene is rpoC

Identifier: 226942771

GI number:

Start: 598022

End: 602221

Strand: Direct

Name: rpoC

Synonym: Avin_06180

Alternate gene names: NA

Gene position: NA

Preceding gene: 226942770

Following gene: 226942772

Centisome position: NA

GC content: NA

Gene sequence:

>4200_bases
TTGAAAGACCTGCTGAATCTCTTGAAAAACCAGGGTCAACTCGAAGAGTTCGATGCCATCCGTATCGGTCTGGCTTCGCC
CGAGATGATCCGTTCCTGGTCCTTCGGCGAAGTGAAAAAGCCGGAGACCATCAACTACCGTACCTTCAAGCCGGAACGCG
ATGGCCTGTTCTGCGCCAAGATCTTCGGGCCGGTGAAGGACTACGAGTGTCTGTGCGGCAAGTACAAGCGACTGAAGCAT
CGCGGCGTGATCTGCGAGAAGTGCGGGGTGGAAGTCGCTCTGGCCAAGGTGCGCCGCGAGCGCATGGCGCATATCGAGCT
GGCTTCTCCGGTCGCTCATATCTGGTTCCTCAAGTCGCTGCCGTCGCGCATCGGCCTGCTGTTGGACATGACTCTGCGCG
ATATCGAGCGTGTGCTCTATTTCGAGAGCTATGTGGTGATCGATCCGGGCATGACCACCCTGGAGAAAGGTCAGTTGCTC
AACGACGAGCAATATTTCGAGGCCCTCGAGGAGTTCGGTGACGACTTCGATGCGCGCATGGGCGCCGAGGCGGTCCGCGA
GCTGCTCAACCAGATCGACCTGGAGCACGAGATCGGCCGCCTGCGCGAGGAAATCCCGCAGACCAACTCGGAAACCAAGA
TCAAGAAGCTGTCCAAGCGCCTGAAGCTGATGGAGGCCTTCCAGGGCTCCGGCAACCTGCCGGAGTGGATGGTGCTGACC
GTGTTGCCGGTGCTGCCGCCGGATCTGCGTCCGCTGGTACCGCTGGACGGTGGCCGCTTCGCGACCTCCGACCTGAACGA
TCTGTACCGCCGGGTGATCAACCGCAACAACCGCCTGAAGCGCCTGCTCGACCTGGCCGCACCGGACATCATCGTGCGCA
ACGAGAAGCGCATGCTGCAGGAGGCGGTTGACGCCCTGCTGGACAACGGTCGCCGTGGCCGGGCCATTACCGGCTCCAAC
AAGCGCCCGCTGAAGTCCCTGGCCGACATGATCAAGGGCAAGCAGGGTCGTTTCCGTCAGAACCTGCTGGGCAAGCGCGT
CGACTATTCCGGCCGTTCGGTGATCACCGTGGGGCCGACCCTGCGCCTGCACCAGTGCGGTCTGCCGAAGAAGATGGCAT
TGGAACTGTTCAAGCCGTTCATTTTCGGCAAGTTGGAAACCCGCGGCATGGCCACCACCATCAAGGCGGCCAAGAAGATG
GTCGAGCGCGAGTTGCCCGAGGTCTGGGACGTGCTCGCCGAGGTCATCCGCGAACATCCCGTGCTGCTCAACCGCGCGCC
GACCCTGCACCGCCTGGGTATCCAGGCGTTCGAGCCGGTGCTCATCGAGGGCAAGGCGATCCAGTTGCACCCGCTGGTCT
GTGCCGCCTACAACGCCGACTTCGACGGCGACCAGATGGCCGTGCACGTGCCGCTGACCCTTGAGGCCCAGCTCGAGGCG
CGCGCACTGATGATGTCGACCAACAACATCCTCTCGCCCGCCAACGGCGAGCCGATCATCGTGCCGTCGCAGGACGTGGT
GCTGGGTCTGTACTACATGACCCGCGAGGCGGTGAACGCCAGGGGCGAGGGGCGCGTCTTCGCCGACCTGCAGGAGGTCG
ACCGGGTGTTCCGGGGCGGCGAGGCGTCGCTGCACGCCCGCGTGAAGGTGCGGATCAACGAGACGGTCAGGCAGAAGGAC
GGCAGCCTGGTCCACAACACCCGCATCGTCGACACCACCGTCGGCCGTGCGCTGCTGTTCCAGGTCGTACCGGCCGGCTT
GTCGTTCGACGTCGTCAACCAGCCGATGAAGAAGAAGGCGATCTCCAAGCTGATCAACCACTGCTATCGCACCGTGGGTC
TGAAGGACACCGTCATCTTCGCCGACCAGCTGATGTATACCGGTTTCGCCTTCTCGACCCTGTCGGGGGTTTCCATCGGA
GTGAACGACTTCGTCATTCCGACGGAAAAGGCGCGCATCATCGAAGGCGCCACCGAGGAAGTGAAAGAGATCGAGAGCCA
GTACGCCACCGGCCTGGTGACCCAGGGCGAGAAGTACAACAAGGTGATCGACCTGTGGTCGAAGGCCAACGACGAAGTGT
CCAAGGCGATGATGGCCAACCTCTCGAAGGAGAAGGTCATCGACCGCCAGGGCAACGAGGTCGAGCAGGAGTCGTTCAAC
TCCATGTACATGATGGCGGACTCCGGAGCGCGGGGTTCCGCGGCGCAGATCCGCCAGTTGGCCGGCATGCGCGGCCTGAT
GGCCAAGCCCGACGGCTCGATCATCGAGACGCCGATCACCGCGAATTTCCGCGAGGGCCTGAACGTACTGCAGTACTTCA
TCTCCACCCACGGCGCCCGCAAGGGCCTGGCGGATACCGCGCTGAAGACCGCGAACTCCGGTTACCTCACCCGTCGCCTG
GTGGATGTGGCCCAGGACCTGGTGGTGACCGAGATCGATTGCGGTACCGAACAGGGGCTGCTGATGACTCCGCACATCGA
GGGCGGCGACGTGGTCGAGCCGCTCGGCGAGCGGGTGCTTGGCCGGGTCATTGCCAGAGATGTGTTCCGGCCCGGTGGCG
ACGAGGTCATAGTGCCGGCCGGAACCCTGATCGACGAGAAGTGGGTCGAGTTCATCGAGATGAACAGCATCGACGAGGTG
GTCGTGCGTTCGCCGATCACCTGCGAGACCCGTTACGGCATTTGCGCCAAGTGCTATGGCCGCGATCTGGCGCGCGGGCA
TCAGGTGAACATCGGCGAGGCGGTGGGCGTGATCGCTGCGCAGTCCATCGGTGAGCCGGGCACCCAGTTGACCATGCGGA
CCTTCCACATCGGTGGTGCGGCCAGCCGGACCTCGGCCGTGGACAATGTCCAGGTGAAGAACGGCGGCAACATCCGCCTG
CACAACCTGAAATATGTCGAGCGGAGCGATGGTGCGCTGGTCGCCGTGTCCCGTTCCGGCGAACTGGCCGTGGCCGACGA
TTTCGGTCGCGAGCGCGAGCGCTACAAGCTGCCGTACGGTGCGGTGATCTCGGTGAAGGAGGGCGACAAGGTCAGCCCGG
GGGCCATCGTTGCCAAGTGGGACCCGCACACTCACCCGATCGTGACCGAGATGAAGGGTACCGTGACCTTCGTCGGCATG
GAGGAGGGGATCACCATCAAGCGCCAGACCGACGAACTGACCGGTCTGACCAACATCGAGGTGATCGATCCGAAGGACCG
TCCGGCTGCCGGCAAGGACATCCGTCCAGCGGTCAAGCTGGTCGATGCCAGCGGCAAGGAACTGTTGCTGCCGGGTACCG
ACGTGCCGGCCCAGTATTTCCTGCCGGCCAACGCCCTGGTCGGCGTGGCCGACGGTGCCGAAGTGGGAGTGGGCGATGTG
ATCGCCCGTATTCCTCAGGAAACTTCGAAGACCCGCGACATCACCGGTGGTCTGCCGCGCGTTGCCGACCTGTTCGAGGC
GCGCCGTCCGAAGGAGCCGTCGATCCTGGCGGAGGTCAGCGGTACCATCAGTTTCGGCAAGGAAACCAAGGGCAAGCGCC
GTCTGGTCATCACGCCGAACGATGGCAGCGAGGCGTACGAGGAACTGATCCCGAAGTGGCGCCACCTCAACGTCTTCGAG
GGCGAACAGGTGAACCGTGGCGAGGTGATCTCCGATGGTCCGAGCAATCCGCATGACATTCTGCGTCTGCTGGGTGTCAG
CGCTCTGGCCAAGTACATCGTCAACGAGATCCAGGATGTCTATCGCCTGCAGGGTGTGAAGATCAACGACAAGCACATCG
AGACCATTCTCCGTCAGATGCTGCGCAAGGTGGAGATCACCGAGGCGGGAGACTCGAGCTTCATCAAGGGCGATCAGGTG
GAACTGACCCAGGTGCTCGAGGAGAACGAGCAACTGGCGACCGAGGATCGTTTCTCGGCGAAGTACGAGCGCATCCTTCT
GGGTATCACCAAGGCATCGCTTTCGACCGAGTCGTTCATTTCCGCCGCTTCCTTCCAGGAAACCACCCGTGTGCTCACCG
AGGCCGCGGTCACCGGCAAGCGTGACTACTTGCGTGGCCTGAAGGAAAACGTCGTGGTGGGGCGGCTGATCCCGGCCGGT
ACCGGCCTGGCCTATCACAGCGAGCGCCGGCGCAAGCGCGACGCCGAGAAGCCGGTACGGGTGAGTGCGGAAGAGGTCGA
GGCAGCGCTGACCGAAGCCCTGAACACCAGCGGCAACTGA

Upstream 100 bases:

>100_bases
CGCTCGGCATCGACATCGAACTGGAAACCGAATAACCACGCACCGCTCGCGCGGTGCCCGGCGCGGGCCGGACACCGCCG
GTTCGTGAGGAGGAAAGGCT

Downstream 100 bases:

>100_bases
CGGATATGGCCCGGCGTCCTGCCGGGCCTTGCCTTGACTGGGTTTCGGAGTCTCTTTAGACTTACGGACCCTAAATTTGG
CAGGGCGGACCGCTCTGCCA

Product: DNA-directed RNA polymerase subunit beta'

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1399_residues
MKDLLNLLKNQGQLEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKH
RGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLL
NDEQYFEALEEFGDDFDARMGAEAVRELLNQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSN
KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIFGKLETRGMATTIKAAKKM
VERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNARGEGRVFADLQEVDRVFRGGEASLHARVKVRINETVRQKD
GSLVHNTRIVDTTVGRALLFQVVPAGLSFDVVNQPMKKKAISKLINHCYRTVGLKDTVIFADQLMYTGFAFSTLSGVSIG
VNDFVIPTEKARIIEGATEEVKEIESQYATGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRQGNEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVTEIDCGTEQGLLMTPHIEGGDVVEPLGERVLGRVIARDVFRPGGDEVIVPAGTLIDEKWVEFIEMNSIDEV
VVRSPITCETRYGICAKCYGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVQVKNGGNIRL
HNLKYVERSDGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVSPGAIVAKWDPHTHPIVTEMKGTVTFVGM
EEGITIKRQTDELTGLTNIEVIDPKDRPAAGKDIRPAVKLVDASGKELLLPGTDVPAQYFLPANALVGVADGAEVGVGDV
IARIPQETSKTRDITGGLPRVADLFEARRPKEPSILAEVSGTISFGKETKGKRRLVITPNDGSEAYEELIPKWRHLNVFE
GEQVNRGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEITEAGDSSFIKGDQV
ELTQVLEENEQLATEDRFSAKYERILLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAG
TGLAYHSERRRKRDAEKPVRVSAEEVEAALTEALNTSGN

Sequences:
NA

Specific function: NA

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA