| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is pvdA [H]
Identifier: 226830777
GI number: 226830777
Start: 1909095
End: 1910501
Strand: Direct
Name: pvdA [H]
Synonym: BURPS1106A_1944
Alternate gene names: 226830777
Gene position: 1909095-1910501 (Clockwise)
Preceding gene: 226830774
Following gene: 126452615
Centisome position: 47.87
GC content: 70.93
Gene sequence:
>1407_bases ATGCAGAGAGATACCGTATTCGACCTGATCGGCGTCGGTTTCGGGCCGTCGAACCTCGCGCTCGCCGTGCGACTCGCGGA AGCGGGCGAGCGCGCCGCGTTCGCGCATTGCTACGTCGAGCGCCAGCCGGCGTTCGGCTGGCACCGCGGGATGCTGCTCG ACGACTGCCGGATGCAGATTTCCTTCCTGAAGGATCTCGTCACGCTGCGCGACCCGAAGAGCCGCTTCACGTTCATCAAC TACCTGTACGAGCACGGGCGCCTGAGCGAGTTCGTGAACCTGAAGAATTTCTATCCGACGCGCGTCGAGTTTCACGATTA CCTGAGCTGGGTCGCGAACGCGTTCGACGAGCGCGTCCATTACGGCGAGACGGTGACGGCGATCGAGCCCGTCGCGGCGC CGGGCGCGCCCGGCGAGATCGACGCGCTGCGCGTGTTCTCGAAGGGCGCCGACGGGCGCGAGCGGCAGCGCGTCGCGCGC GCGCTGTCGGTGGGCGTCGGCGGCGCGCCGAGCGTGCCGGATGCGTTCGCCGCGCTCGGGCCCGAGTGCGTCGTCCATTC GTCGAGCTACCTCACGTCGATCGAGCGCCTGGTCGGCGCGCCGGGCGCGCACGCGCGAAAGCGCATCGCGGTGATCGGCG CCGGGCAGAGCGCGGCCGAGGTGTTCGTCGATCTCGCGCGGCGCTTCCCGCACGTCGAGGCGAGCCTCGTGATCCGCTCG GGCGCGCTCAAGCCCGCGGACGACAGCCCGTTCGTCAACGAGATCTTCAATCCGGCGTTCACCGACGTCGTCTACGCGCA GCCGGCGAGCGGCCGGCGCTCGCTCATCGAGCGCTTTCGCGACACGAACTACGCGGTCGTCGATCGCCCGCTCATCGAGC AGATCTACGAGATGCTCTATCTGCAGCGCGTCGCCGGCGAGGCGCCCGGCGCGCCGCGCCACCGGCTGCTCGCGAACACC GCGATCGAATCCGCCGCGCGCACGGCGCACGGGCAGGTGGAGCTCGCGTTGCGCGACCGGCTGACGGGCGACGCGCGCAC CGAGCGCTTCGACGGGCTCGTGCTCGCGACGGGCTACCGCCGCGACACGCATCTGCCGCTTCTCGAGGGGCTCGCGCCGC ACTTGGGCGACGCGCTCGCGGCGGGCGACGTCGCGCGCGACTACCGGCTCGCGACGCCCGCGCACTTCAAGCCGCGGATC TATCTGCAAGGCTGCTGCGAGGACAGCCACGGGCTGTCCGACACGCTGCTGTCGGTGCTCGCGCGGCGCGCGGACGAAAT CGCCGCGTCGCTCGCCGACGCAGCCGACACGACCGAATACGAAGAAGCCGACCCGGCCGCCGGCCGCGCGCGGCCGCGAC ACGAAAACAACGGGGTGAGCGACGGCCGGCTGGCCATCGCTCTTTGA
Upstream 100 bases:
>100_bases GGCCGCATCGGGCGCATCGATGAACGGCGCGGTCCGCATCACGTTTTCGTCCGGCCGGCGCCGTCCGCGCGCCGGCCACA CCGTTAAGGGAATCAGAGAC
Downstream 100 bases:
>100_bases TGAAGGTGCGGCCCTCGCGGCCGCTTTGCAACTTGGAGCAACGGAAGATGGAGTGGGCAACCAGCACGCGCGTGCGTGCG ATCGCGGCCGGCGTGGCGTT
Product: putative L-ornithine 5-monooxygenase MbaA
Products: NA
Alternate protein names: L-ornithine N(5)-oxygenase [H]
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MQRDTVFDLIGVGFGPSNLALAVRLAEAGERAAFAHCYVERQPAFGWHRGMLLDDCRMQISFLKDLVTLRDPKSRFTFIN YLYEHGRLSEFVNLKNFYPTRVEFHDYLSWVANAFDERVHYGETVTAIEPVAAPGAPGEIDALRVFSKGADGRERQRVAR ALSVGVGGAPSVPDAFAALGPECVVHSSSYLTSIERLVGAPGAHARKRIAVIGAGQSAAEVFVDLARRFPHVEASLVIRS GALKPADDSPFVNEIFNPAFTDVVYAQPASGRRSLIERFRDTNYAVVDRPLIEQIYEMLYLQRVAGEAPGAPRHRLLANT AIESAARTAHGQVELALRDRLTGDARTERFDGLVLATGYRRDTHLPLLEGLAPHLGDALAAGDVARDYRLATPAHFKPRI YLQGCCEDSHGLSDTLLSVLARRADEIAASLADAADTTEYEEADPAAGRARPRHENNGVSDGRLAIAL
Sequences:
>Translated_468_residues MQRDTVFDLIGVGFGPSNLALAVRLAEAGERAAFAHCYVERQPAFGWHRGMLLDDCRMQISFLKDLVTLRDPKSRFTFIN YLYEHGRLSEFVNLKNFYPTRVEFHDYLSWVANAFDERVHYGETVTAIEPVAAPGAPGEIDALRVFSKGADGRERQRVAR ALSVGVGGAPSVPDAFAALGPECVVHSSSYLTSIERLVGAPGAHARKRIAVIGAGQSAAEVFVDLARRFPHVEASLVIRS GALKPADDSPFVNEIFNPAFTDVVYAQPASGRRSLIERFRDTNYAVVDRPLIEQIYEMLYLQRVAGEAPGAPRHRLLANT AIESAARTAHGQVELALRDRLTGDARTERFDGLVLATGYRRDTHLPLLEGLAPHLGDALAAGDVARDYRLATPAHFKPRI YLQGCCEDSHGLSDTLLSVLARRADEIAASLADAADTTEYEEADPAAGRARPRHENNGVSDGRLAIAL >Mature_468_residues MQRDTVFDLIGVGFGPSNLALAVRLAEAGERAAFAHCYVERQPAFGWHRGMLLDDCRMQISFLKDLVTLRDPKSRFTFIN YLYEHGRLSEFVNLKNFYPTRVEFHDYLSWVANAFDERVHYGETVTAIEPVAAPGAPGEIDALRVFSKGADGRERQRVAR ALSVGVGGAPSVPDAFAALGPECVVHSSSYLTSIERLVGAPGAHARKRIAVIGAGQSAAEVFVDLARRFPHVEASLVIRS GALKPADDSPFVNEIFNPAFTDVVYAQPASGRRSLIERFRDTNYAVVDRPLIEQIYEMLYLQRVAGEAPGAPRHRLLANT AIESAARTAHGQVELALRDRLTGDARTERFDGLVLATGYRRDTHLPLLEGLAPHLGDALAAGDVARDYRLATPAHFKPRI YLQGCCEDSHGLSDTLLSVLARRADEIAASLADAADTTEYEEADPAAGRARPRHENNGVSDGRLAIAL
Specific function: Catalyzes the hydroxylation of L-ornithine (L-Orn) which is later incorporated in ornibactin [H]
COG id: COG3486
COG function: function code Q; Lysine/ornithine N-monooxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51124; Mature: 51124
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRDTVFDLIGVGFGPSNLALAVRLAEAGERAAFAHCYVERQPAFGWHRGMLLDDCRMQI CCCCHHHHHHHCCCCCCCCEEEEEEHHCCCHHHHHHHEEECCCCCCHHCCCHHHHHHHHH SFLKDLVTLRDPKSRFTFINYLYEHGRLSEFVNLKNFYPTRVEFHDYLSWVANAFDERVH HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH YGETVTAIEPVAAPGAPGEIDALRVFSKGADGRERQRVARALSVGVGGAPSVPDAFAALG CCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCC PECVVHSSSYLTSIERLVGAPGAHARKRIAVIGAGQSAAEVFVDLARRFPHVEASLVIRS CHHEEECHHHHHHHHHHHCCCCCHHHCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC GALKPADDSPFVNEIFNPAFTDVVYAQPASGRRSLIERFRDTNYAVVDRPLIEQIYEMLY CCCCCCCCCCHHHHHCCHHHHHEEECCCCCCHHHHHHHHCCCCCEEECCHHHHHHHHHHH LQRVAGEAPGAPRHRLLANTAIESAARTAHGQVELALRDRLTGDARTERFDGLVLATGYR HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCHHHHHHCCEEEEECCC RDTHLPLLEGLAPHLGDALAAGDVARDYRLATPAHFKPRIYLQGCCEDSHGLSDTLLSVL CCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHH ARRADEIAASLADAADTTEYEEADPAAGRARPRHENNGVSDGRLAIAL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC >Mature Secondary Structure MQRDTVFDLIGVGFGPSNLALAVRLAEAGERAAFAHCYVERQPAFGWHRGMLLDDCRMQI CCCCHHHHHHHCCCCCCCCEEEEEEHHCCCHHHHHHHEEECCCCCCHHCCCHHHHHHHHH SFLKDLVTLRDPKSRFTFINYLYEHGRLSEFVNLKNFYPTRVEFHDYLSWVANAFDERVH HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH YGETVTAIEPVAAPGAPGEIDALRVFSKGADGRERQRVARALSVGVGGAPSVPDAFAALG CCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCC PECVVHSSSYLTSIERLVGAPGAHARKRIAVIGAGQSAAEVFVDLARRFPHVEASLVIRS CHHEEECHHHHHHHHHHHCCCCCHHHCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC GALKPADDSPFVNEIFNPAFTDVVYAQPASGRRSLIERFRDTNYAVVDRPLIEQIYEMLY CCCCCCCCCCHHHHHCCHHHHHEEECCCCCCHHHHHHHHCCCCCEEECCHHHHHHHHHHH LQRVAGEAPGAPRHRLLANTAIESAARTAHGQVELALRDRLTGDARTERFDGLVLATGYR HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCHHHHHHCCEEEEECCC RDTHLPLLEGLAPHLGDALAAGDVARDYRLATPAHFKPRIYLQGCCEDSHGLSDTLLSVL CCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHH ARRADEIAASLADAADTTEYEEADPAAGRARPRHENNGVSDGRLAIAL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA