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The map label for this gene is rnpA

Identifier: 226225404

GI number: 226225404

Start: 2911282

End: 2911641

Strand: Reverse

Name: rnpA

Synonym: Lm4b_02827

Alternate gene names: 226225404

Gene position: 2911641-2911282 (Counterclockwise)

Preceding gene: 226225405

Following gene: 226225403

Centisome position: 99.96

GC content: 30.56

Gene sequence:

>360_bases
ATGAAAAAAAAATATAGAATTAAAAAAAATGACGATTTTCAAAAAGTATTCCGAAGAGGAAAATCTTTTGCTAACCGTCA
ATTTGTTGTTTATACTTTAAAGCAAGAAGGATCGAATCATTTTCGAATTGGTTTATCAGTTAGTAAAAAAATTGGAAACG
CTGTCTGTCGAAATCGAATTAAACGTTACATAAGACAATCATTCCATGAATTAGAAAGCCAAATCAATCCTGAAAATGAA
TATATTATCATCGCCAGAAAACCGGCGGCCAATATGGATTTTCATGAGGTAAAGAAAAGTTTGATTCATGTTTTAAAAGT
GGGGCGTGTTTTAAAGCAAAAACCAAACAATTCAAAGTGA

Upstream 100 bases:

>100_bases
TATCTGCGTAGACCACTGAAAACGACTCAGTGGTTTTTTTTTTGAAAAATCGCTGAGGCAAACGGCCTTATACTAAGATA
TGTAAGAAGATGGAGAATGT

Downstream 100 bases:

>100_bases
GTGGAAATTTTAAAAAGGCGAAATTGGAGGTTACATCAATTTGAAGAAGAAAAAGCGATTCAAACAGAAGTTGCTCATCG
CAAGTCTTGTAATCGGATTA

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENE
YIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK

Sequences:

>Translated_119_residues
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENE
YIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK
>Mature_119_residues
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENE
YIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 14103; Mature: 14103

Theoretical pI: Translated: 11.29; Mature: 11.29

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRI
CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHH
KRYIRQSFHELESQINPENEYIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRI
CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHH
KRYIRQSFHELESQINPENEYIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]