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The map label for this gene is fdhD [H]

Identifier: 226225130

GI number: 226225130

Start: 2631056

End: 2631844

Strand: Reverse

Name: fdhD [H]

Synonym: Lm4b_02551

Alternate gene names: 226225130

Gene position: 2631844-2631056 (Counterclockwise)

Preceding gene: 226225131

Following gene: 226225129

Centisome position: 90.36

GC content: 43.09

Gene sequence:

>789_bases
TTGATGGATATTGTTTCGCACCAAAAAATCCGTCGTTTTGAAGCGGGCACTTTTCAAGAAATTGAATCAAGTGTTGCGAC
CGAGTATCCGCTAACTATCTACGTTAACGACCAAGAACTCGTGACCATCGTCTGCACGCCAGAATATCTGGAAGATTTAG
TTGTGGGCTTTCTGACATCGGAAGGCATCGTTCGGGGTCCTCAAGACATCGATTCCGTGGATATCATCGAAGCGACTGGA
CACGCCAAGGTTAGCGCTAATTTTGTGAACAAATTCAATGCCAAGTATCGCGGCAAGCGCTACATTACCTCGTGTTGCGG
CAAGTCTCGGGAAAACTTCTACTTCCAATCAGACGCCTCACTCGTCAATGTGAAGCAAAATGGAAGTCTACAACTAACAA
CCGACATGATTTTCCGCTTAATGGAAAATTTTGAACAAAATTCTGCTACATTCCATCAAACTGGGGGTGTGCATAATGCG
GCTCTATGTAGTTCAGCGGAAATTATATACAGCAGGATGGACATAGGTCGGCATAATGCCTTAGATAAAATATATGGCCG
TGCCTTGCAAGACGGAACATCCACTGAAGATAAGGCAATTATTTTTAGTGGGCGCATTTCTTCGGAAATCCTCGTTAAAA
CAGCAAAACTAGGTTGTGGAATTATTTTGTCTCGTTCTGCCCCAACCGAACTGGCGATTAATATGGCCGAAGAATTAAAT
ATTACAACCGTTGGCTTTATTCGTGGTGATAGGTTAAATGTCTATTCTGGATTTGAACGAATCACGTAA

Upstream 100 bases:

>100_bases
GGTGTGACCTTTTTAAAAGAAGTTGGGCAAACATTAAAATAAGTAGACGAAACAGCGAGACTAAGATGTGTCGCTGTTTC
AGTTTAGAGAGGAGTGGTTT

Downstream 100 bases:

>100_bases
GTTTGATATGATGCAGTAAAATAGGACAGTAAGGTGAGCGGTGAAAATGAAACAAATATTAGTAGTAGATGATGATCGGC
ATATACTTAAACTTGTGGGC

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MMDIVSHQKIRRFEAGTFQEIESSVATEYPLTIYVNDQELVTIVCTPEYLEDLVVGFLTSEGIVRGPQDIDSVDIIEATG
HAKVSANFVNKFNAKYRGKRYITSCCGKSRENFYFQSDASLVNVKQNGSLQLTTDMIFRLMENFEQNSATFHQTGGVHNA
ALCSSAEIIYSRMDIGRHNALDKIYGRALQDGTSTEDKAIIFSGRISSEILVKTAKLGCGIILSRSAPTELAINMAEELN
ITTVGFIRGDRLNVYSGFERIT

Sequences:

>Translated_262_residues
MMDIVSHQKIRRFEAGTFQEIESSVATEYPLTIYVNDQELVTIVCTPEYLEDLVVGFLTSEGIVRGPQDIDSVDIIEATG
HAKVSANFVNKFNAKYRGKRYITSCCGKSRENFYFQSDASLVNVKQNGSLQLTTDMIFRLMENFEQNSATFHQTGGVHNA
ALCSSAEIIYSRMDIGRHNALDKIYGRALQDGTSTEDKAIIFSGRISSEILVKTAKLGCGIILSRSAPTELAINMAEELN
ITTVGFIRGDRLNVYSGFERIT
>Mature_262_residues
MMDIVSHQKIRRFEAGTFQEIESSVATEYPLTIYVNDQELVTIVCTPEYLEDLVVGFLTSEGIVRGPQDIDSVDIIEATG
HAKVSANFVNKFNAKYRGKRYITSCCGKSRENFYFQSDASLVNVKQNGSLQLTTDMIFRLMENFEQNSATFHQTGGVHNA
ALCSSAEIIYSRMDIGRHNALDKIYGRALQDGTSTEDKAIIFSGRISSEILVKTAKLGCGIILSRSAPTELAINMAEELN
ITTVGFIRGDRLNVYSGFERIT

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=245, Percent_Identity=31.4285714285714, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 29109; Mature: 29109

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDIVSHQKIRRFEAGTFQEIESSVATEYPLTIYVNDQELVTIVCTPEYLEDLVVGFLTS
CCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCEEEEEEECHHHHHHHHHHHHHC
EGIVRGPQDIDSVDIIEATGHAKVSANFVNKFNAKYRGKRYITSCCGKSRENFYFQSDAS
CCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHCCHHCCHHHHHHHHCCCCCCEEEECCCC
LVNVKQNGSLQLTTDMIFRLMENFEQNSATFHQTGGVHNAALCSSAEIIYSRMDIGRHNA
EEEEECCCCEEEHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCHHHHHHHHHCCCCHHH
LDKIYGRALQDGTSTEDKAIIFSGRISSEILVKTAKLGCGIILSRSAPTELAINMAEELN
HHHHHHHHHCCCCCCCCCEEEEECCCCCHHHEEHHCCCCEEEEECCCCHHHEEEHHHHCC
ITTVGFIRGDRLNVYSGFERIT
EEEEEEEECCEEEEECCHHHCC
>Mature Secondary Structure
MMDIVSHQKIRRFEAGTFQEIESSVATEYPLTIYVNDQELVTIVCTPEYLEDLVVGFLTS
CCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCEEEEEEECHHHHHHHHHHHHHC
EGIVRGPQDIDSVDIIEATGHAKVSANFVNKFNAKYRGKRYITSCCGKSRENFYFQSDAS
CCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHCCHHCCHHHHHHHHCCCCCCEEEECCCC
LVNVKQNGSLQLTTDMIFRLMENFEQNSATFHQTGGVHNAALCSSAEIIYSRMDIGRHNA
EEEEECCCCEEEHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCHHHHHHHHHCCCCHHH
LDKIYGRALQDGTSTEDKAIIFSGRISSEILVKTAKLGCGIILSRSAPTELAINMAEELN
HHHHHHHHHCCCCCCCCCEEEEECCCCCHHHEEHHCCCCEEEEECCCCHHHEEEHHHHCC
ITTVGFIRGDRLNVYSGFERIT
EEEEEEEECCEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]