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The map label for this gene is yocH [H]

Identifier: 226225070

GI number: 226225070

Start: 2573150

End: 2573983

Strand: Reverse

Name: yocH [H]

Synonym: Lm4b_02491

Alternate gene names: 226225070

Gene position: 2573983-2573150 (Counterclockwise)

Preceding gene: 226225071

Following gene: 226225069

Centisome position: 88.37

GC content: 34.17

Gene sequence:

>834_bases
ATGAAGAAGACAGTAGTAGCCATTGCGGCTGGTTTAATTATTGCAGGATCTGGTTCAACTCAAGCTTTTGCAGCTGAGTA
TAAAGTGCAAGATGGTGATTCACTATGGAAAATATCAAATGAAAATAATGTCTCTATAAAACAATTGAAAGAAGATAACA
ATTTGAGTTCTGACATTATTTTTCCGAACCAAACATTGCAAGTAAATAGTAGTGAGAAAAAATCCACTACTAATAACAAT
TCTGAATACACAGTTGTTGCAGGAGATACACTTGGACATATCGCTGTTGATAAAGGTGTAACAGTTAATCAACTTAAATC
GTGGAATAATCTTTCTTCAGATTTAATATTAGTAGGTCAAAAATTATCTATTGGTAATAAAGCTTCAGCAAGTGAAAGTA
ATGCTTCAGAAAACAATTCAACAGCAAATAATTCAGCCAATAATAAAGTAACAGAACAACCGAAAGAAGAAAAGGCGGCT
CCAACAACTCAAAAATCAACTTCTTCTAATGAAGCATCTTCAAACAGTTCTTCAGCACAAGGTAATGTTTCAAAAGAGTT
AACGGTAACTGCGACAGCATATAGTAAAGCTGAACCTGGCATGGGCCACATGACAGCGACAGGGATTGATTTAAATGATA
ATTCAAGAGTAATTGCAGTTGATCCATCTGTTATTCCTTTAGGTTCAAAAGTTTATGTTGAAGGATACGGACAAGCAATT
GCAGCTGATACTGGCGGTGCAATTAAAGGTAATAAAATTGATGTACATTTAAACTCAGTACAAGAAGCTAACAACTGGGG
CGTAAAACAAGTTAAAGTACAAATTTTAGATTAA

Upstream 100 bases:

>100_bases
TTGAAAGTGTGTCATACATGCTTAATTTTTCAGTAACCAAGCTGATAGTTTCGTATGGTACGATTATCCTCGAAAGTTAT
CAAGGAGGGAAAATAATTAC

Downstream 100 bases:

>100_bases
TTCATTCCATATAGAAAGACTGTGAATGGCGTAATGCTATTTGCAGTCTTTTTTATAGATTAAAAATAGGAAGCATCCTT
GTTTTATGATAAACTTATAC

Product: cell wall binding protein

Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKKTVVAIAAGLIIAGSGSTQAFAAEYKVQDGDSLWKISNENNVSIKQLKEDNNLSSDIIFPNQTLQVNSSEKKSTTNNN
SEYTVVAGDTLGHIAVDKGVTVNQLKSWNNLSSDLILVGQKLSIGNKASASESNASENNSTANNSANNKVTEQPKEEKAA
PTTQKSTSSNEASSNSSSAQGNVSKELTVTATAYSKAEPGMGHMTATGIDLNDNSRVIAVDPSVIPLGSKVYVEGYGQAI
AADTGGAIKGNKIDVHLNSVQEANNWGVKQVKVQILD

Sequences:

>Translated_277_residues
MKKTVVAIAAGLIIAGSGSTQAFAAEYKVQDGDSLWKISNENNVSIKQLKEDNNLSSDIIFPNQTLQVNSSEKKSTTNNN
SEYTVVAGDTLGHIAVDKGVTVNQLKSWNNLSSDLILVGQKLSIGNKASASESNASENNSTANNSANNKVTEQPKEEKAA
PTTQKSTSSNEASSNSSSAQGNVSKELTVTATAYSKAEPGMGHMTATGIDLNDNSRVIAVDPSVIPLGSKVYVEGYGQAI
AADTGGAIKGNKIDVHLNSVQEANNWGVKQVKVQILD
>Mature_277_residues
MKKTVVAIAAGLIIAGSGSTQAFAAEYKVQDGDSLWKISNENNVSIKQLKEDNNLSSDIIFPNQTLQVNSSEKKSTTNNN
SEYTVVAGDTLGHIAVDKGVTVNQLKSWNNLSSDLILVGQKLSIGNKASASESNASENNSTANNSANNKVTEQPKEEKAA
PTTQKSTSSNEASSNSSSAQGNVSKELTVTATAYSKAEPGMGHMTATGIDLNDNSRVIAVDPSVIPLGSKVYVEGYGQAI
AADTGGAIKGNKIDVHLNSVQEANNWGVKQVKVQILD

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG1388

COG function: function code M; FOG: LysM repeat

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 29042; Mature: 29042

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTVVAIAAGLIIAGSGSTQAFAAEYKVQDGDSLWKISNENNVSIKQLKEDNNLSSDII
CCCEEEEEEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCEEE
FPNQTLQVNSSEKKSTTNNNSEYTVVAGDTLGHIAVDKGVTVNQLKSWNNLSSDLILVGQ
CCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHCCCCCCCCEEEEEE
KLSIGNKASASESNASENNSTANNSANNKVTEQPKEEKAAPTTQKSTSSNEASSNSSSAQ
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
GNVSKELTVTATAYSKAEPGMGHMTATGIDLNDNSRVIAVDPSVIPLGSKVYVEGYGQAI
CCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCEEECCCEEEEEECCCEE
AADTGGAIKGNKIDVHLNSVQEANNWGVKQVKVQILD
EECCCCCEECCEEEEEECCCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MKKTVVAIAAGLIIAGSGSTQAFAAEYKVQDGDSLWKISNENNVSIKQLKEDNNLSSDII
CCCEEEEEEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCEEE
FPNQTLQVNSSEKKSTTNNNSEYTVVAGDTLGHIAVDKGVTVNQLKSWNNLSSDLILVGQ
CCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHCCCCCCCCEEEEEE
KLSIGNKASASESNASENNSTANNSANNKVTEQPKEEKAAPTTQKSTSSNEASSNSSSAQ
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
GNVSKELTVTATAYSKAEPGMGHMTATGIDLNDNSRVIAVDPSVIPLGSKVYVEGYGQAI
CCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCEEECCCEEEEEECCCEE
AADTGGAIKGNKIDVHLNSVQEANNWGVKQVKVQILD
EECCCCCEECCEEEEEECCCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]