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The map label for this gene is swrAB [H]

Identifier: 226225050

GI number: 226225050

Start: 2550433

End: 2551608

Strand: Reverse

Name: swrAB [H]

Synonym: Lm4b_02471

Alternate gene names: 226225050

Gene position: 2551608-2550433 (Counterclockwise)

Preceding gene: 226225051

Following gene: 226225049

Centisome position: 87.6

GC content: 38.01

Gene sequence:

>1176_bases
ATGGATGTTTTTGTTGAAATACTAAATGGAATAGGGAGACTACTTCTACAACCAGCATTGTATGTAGGAATTCTTTTAGC
GATACTGGCTGGTTTTAACCGTGTGAGGTGGGAACGGAAATCATTTAGTATCAGTATTTATTCACCTTGGTTAGAATTGA
AAAGTTTCTTTGGTGTGAGTTTGTTATTTGGATTAGCTATTTCTGTTGTTACCTCGCTCATTGGATTTGGTGTGATGATA
GAGTGGGTTGCTATTTTTAATGTAGTAGCTTGTTTCTTGCTAATTGTAGGGATGTTCCGTTTGAGTTCAACGGCATTTAC
TATCGGTATTACGAGTTTGATTTTTTATTTCTGCTATTATTTTGATGTGAGTTTAGCACCGTTTACGAATGAGGCATTCA
CGTATGACTCGATTTTTATTGATAACTTTATGATTTCCATGACATTTCTGCTCGCAGTATTGTTATTTGTAGAAGCTTTC
TTAATCCAGTATACAAGCGCAAAAAATCCCTCTCCATCTCTTCGGAAAAGTAAGCGCGGTAAATTAATCGGTTCCTTTCA
ATTAAGAAAATTATGGTTTGTACCGATTGTTATGTTTTTACCAGGAGATGTGTTTACGAAAATTTTTGAGTGGTGGCCAG
TCTTTGCTATTGGTTCGCAGTCGTATTCATTAATCATTTTACCGTTATTCATCGGCTTCCAACAACAAGTACAGACACAA
CTTCCGGAAGAAGCAAGCCGTAAAATTGCTGTTGAGGTAACAACATTAGCGACAATTATTGCTGTAGCTGGTTTATTAGG
AATTGTGATGCCAGTACTGACATTGTTCGCTTTCATGTTCGCTGTAATTGGTCGATTTTGGATTTCTTATCGCCATTATC
GTTCCGAAAAATTAGCACCAAAGAAATTTGGTCCTCAGCCAGATGGGCTTGTAGTTCTGGGTGCTCGTGCGGCCACTCCG
TCTGCGCGACTAAACTTGAAAGCTGGTGAAAAAATTACAGAAGTAAACAGTCGACCAGTGCGTACTCGCGAGGAACTTTA
CGAAGCGCTAAACTTAAATCGAGCATTTTGTAAGCTGAAAGTAATTGATAACGCTGGTGAACCACGTTTTGAACAAACAG
CACTTTATGAGAATGAATCATTTGAACTTGGTTTGTTATTAGTAGAGCCAAGATAA

Upstream 100 bases:

>100_bases
ATTATATGCAAAACGATCTTTATGGATTAAATTTAAAGAAGCGGTAAGCCGACTTTTATCGCCTATATTATAGAAGTATT
AGGGAAAGCTGGTGTAGAAA

Downstream 100 bases:

>100_bases
TTTTAGGACACCAGTGTTGTTTGAAAGCAGCATTGGTGTTTTAAGTTTTTGTAAAGATAAGATTAATATAAAGGCATTTC
TACCCGAAAAAGGTTAATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MDVFVEILNGIGRLLLQPALYVGILLAILAGFNRVRWERKSFSISIYSPWLELKSFFGVSLLFGLAISVVTSLIGFGVMI
EWVAIFNVVACFLLIVGMFRLSSTAFTIGITSLIFYFCYYFDVSLAPFTNEAFTYDSIFIDNFMISMTFLLAVLLFVEAF
LIQYTSAKNPSPSLRKSKRGKLIGSFQLRKLWFVPIVMFLPGDVFTKIFEWWPVFAIGSQSYSLIILPLFIGFQQQVQTQ
LPEEASRKIAVEVTTLATIIAVAGLLGIVMPVLTLFAFMFAVIGRFWISYRHYRSEKLAPKKFGPQPDGLVVLGARAATP
SARLNLKAGEKITEVNSRPVRTREELYEALNLNRAFCKLKVIDNAGEPRFEQTALYENESFELGLLLVEPR

Sequences:

>Translated_391_residues
MDVFVEILNGIGRLLLQPALYVGILLAILAGFNRVRWERKSFSISIYSPWLELKSFFGVSLLFGLAISVVTSLIGFGVMI
EWVAIFNVVACFLLIVGMFRLSSTAFTIGITSLIFYFCYYFDVSLAPFTNEAFTYDSIFIDNFMISMTFLLAVLLFVEAF
LIQYTSAKNPSPSLRKSKRGKLIGSFQLRKLWFVPIVMFLPGDVFTKIFEWWPVFAIGSQSYSLIILPLFIGFQQQVQTQ
LPEEASRKIAVEVTTLATIIAVAGLLGIVMPVLTLFAFMFAVIGRFWISYRHYRSEKLAPKKFGPQPDGLVVLGARAATP
SARLNLKAGEKITEVNSRPVRTREELYEALNLNRAFCKLKVIDNAGEPRFEQTALYENESFELGLLLVEPR
>Mature_391_residues
MDVFVEILNGIGRLLLQPALYVGILLAILAGFNRVRWERKSFSISIYSPWLELKSFFGVSLLFGLAISVVTSLIGFGVMI
EWVAIFNVVACFLLIVGMFRLSSTAFTIGITSLIFYFCYYFDVSLAPFTNEAFTYDSIFIDNFMISMTFLLAVLLFVEAF
LIQYTSAKNPSPSLRKSKRGKLIGSFQLRKLWFVPIVMFLPGDVFTKIFEWWPVFAIGSQSYSLIILPLFIGFQQQVQTQ
LPEEASRKIAVEVTTLATIIAVAGLLGIVMPVLTLFAFMFAVIGRFWISYRHYRSEKLAPKKFGPQPDGLVVLGARAATP
SARLNLKAGEKITEVNSRPVRTREELYEALNLNRAFCKLKVIDNAGEPRFEQTALYENESFELGLLLVEPR

Specific function: Required for surface-adhering cells to differentiate into hyperflagellated and elongated swarm cells [H]

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44120; Mature: 44120

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVFVEILNGIGRLLLQPALYVGILLAILAGFNRVRWERKSFSISIYSPWLELKSFFGVS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEHHHEEEEEECHHHHHHHHHHHH
LLFGLAISVVTSLIGFGVMIEWVAIFNVVACFLLIVGMFRLSSTAFTIGITSLIFYFCYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
FDVSLAPFTNEAFTYDSIFIDNFMISMTFLLAVLLFVEAFLIQYTSAKNPSPSLRKSKRG
HHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
KLIGSFQLRKLWFVPIVMFLPGDVFTKIFEWWPVFAIGSQSYSLIILPLFIGFQQQVQTQ
CEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCEEEEHHHHHCHHHHHHHH
LPEEASRKIAVEVTTLATIIAVAGLLGIVMPVLTLFAFMFAVIGRFWISYRHYRSEKLAP
CCHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KKFGPQPDGLVVLGARAATPSARLNLKAGEKITEVNSRPVRTREELYEALNLNRAFCKLK
HHCCCCCCCEEEEECCCCCCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHCCCHHHEEEE
VIDNAGEPRFEQTALYENESFELGLLLVEPR
EECCCCCCCHHHHHHCCCCCCEEEEEEECCC
>Mature Secondary Structure
MDVFVEILNGIGRLLLQPALYVGILLAILAGFNRVRWERKSFSISIYSPWLELKSFFGVS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEHHHEEEEEECHHHHHHHHHHHH
LLFGLAISVVTSLIGFGVMIEWVAIFNVVACFLLIVGMFRLSSTAFTIGITSLIFYFCYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
FDVSLAPFTNEAFTYDSIFIDNFMISMTFLLAVLLFVEAFLIQYTSAKNPSPSLRKSKRG
HHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
KLIGSFQLRKLWFVPIVMFLPGDVFTKIFEWWPVFAIGSQSYSLIILPLFIGFQQQVQTQ
CEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCEEEEHHHHHCHHHHHHHH
LPEEASRKIAVEVTTLATIIAVAGLLGIVMPVLTLFAFMFAVIGRFWISYRHYRSEKLAP
CCHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KKFGPQPDGLVVLGARAATPSARLNLKAGEKITEVNSRPVRTREELYEALNLNRAFCKLK
HHCCCCCCCEEEEECCCCCCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHCCCHHHEEEE
VIDNAGEPRFEQTALYENESFELGLLLVEPR
EECCCCCCCHHHHHHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]