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The map label for this gene is yvcD [H]

Identifier: 226225027

GI number: 226225027

Start: 2527190

End: 2528665

Strand: Reverse

Name: yvcD [H]

Synonym: Lm4b_02448

Alternate gene names: 226225027

Gene position: 2528665-2527190 (Counterclockwise)

Preceding gene: 226225028

Following gene: 226225026

Centisome position: 86.82

GC content: 36.38

Gene sequence:

>1476_bases
ATGGAAAAAGACAAAAAAACACCCGCAAAAATCTATCCATTTTATCCAAATGGTCAGTTTTATTTTGAACGCGGTGTCGA
AGCGTTTCGTGATCAAAGAATTAAAGAAGCAATCAGGTATTTAGTGCGGGCATCCGAACTGGAGCCAGGAGAAGCTGTTA
TTCTTTGTCAGCTGGCGATATGTTATACAGAAATTGGTCAATTCCATAAATCGAATCAGCTACTTAGAGAAGTTTTAGAA
CAGCGTAATGGGAACATGGAATACTGTTATTATTTTATTGCTAATAATTTTGCGTATATGAAAGATTATCGGAGAGCGTT
ACAATATGCTAATCGTTATTTGGATAGTTCAACTGATGGTGAATATACCGAGGAAGCTAAAGATTTAATTGAAGTTTTAT
TAGAAGAAACGCCTTTTGGTGAGACAATTGAAAATGGCTTTTCTAAATTAGAACAAGAATTCTATTCTTATAAAAAAGAA
ATTAATCGTTATTTAGCAGAAGAAGATAGTGCAGCTGCTTGCGATATTTTAAGAAAAGTCATTGATGAAAAACCGAATTT
TTGGCCTGCTTATAATCAACTCGCTTCGCTTTATTTTGAGCAATTGAAAGAAGAAGAGGGCGTCAGAGTTTTAAGTGATT
TATTATCGAGAAATCCGGGTAATCTCTTGGGTATTTGTGATTTATTTATTTATCACTTTTATAAGGGGAACCGTAAAGAG
GCGGATGAGCTTTATCTGGAACTTCGGGATGTCCTACCGGTTCTAGCGCATCATAAAGAGAAGCTTGGTCTGATTCATGC
GATGATGGGTGAATACGAGGAAGCGGATGATTTGCTTGAACAAGTGGCTGACTTGGAAGTGACTGAGCGTAGTAAGTATT
ATTATTTCCGTGCGAAATCTTCCTATTATTTAGGGGATGTGGAAGGGGCAAAAATGTTTTGGCATTCCTTTTTAGAGTGT
GATTTGTATGAAGATGTTCGGTTTCCGTGGGAGCAAGAGGCGGATTTAACGAATGACACGCGACTTGTGCTTGAGATGCT
TCAAGAGGAAGATGATTTGACTCATATGCTAGGTGTTTATGCATTAACTATTTCTGGAAATCGTCCGGAGTTAGTATTAT
TCCACCCGTTACTTGATATGAGCGATTGGTCTTACATGGAGCATTTAATGTTTACTAATTTTGATTATTTTCCGGATGGG
GCTATTGAACAAAATGGTTATCTGATTGCAAAAGCGATGATTATTTTAAAAGAAAATGGTGTTTTGTTAAATGAAGAAAA
TATGGCGTTATATAAGCAGATGTTTTCGTTAGTTTTAATAGATGCTGGGAAAGATTTAATACTTGGTCGTTATACGATAG
AAACTGTGGCTAGTGCGATTGCTAAGCTGTTTTTACCTCATTTGAAGCTTGAATTAGTAGAAGAATTTGAATGTAGTAAA
TGTGCGCGAGATATTGAGCGAGTTCTGAGCAGATAA

Upstream 100 bases:

>100_bases
AGCTACTCTGACGTAAAAGTCAAAGTAGCTTTTTTTGTCGCCCAAAGTCATAAATTCTATGTTATACTCATTAGGATAAA
GGTATCTTGGAGGTGGAAAA

Downstream 100 bases:

>100_bases
ATAGACCTTTTTGCTATTCCGTATTAGGATTAATTTAGGCTAACTATTGTATACACATAAACGAGGAGGGCAAAAAGAAT
GGCTAGTGAAGAAAAAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MEKDKKTPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRASELEPGEAVILCQLAICYTEIGQFHKSNQLLREVLE
QRNGNMEYCYYFIANNFAYMKDYRRALQYANRYLDSSTDGEYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKE
INRYLAEEDSAAACDILRKVIDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRNPGNLLGICDLFIYHFYKGNRKE
ADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEADDLLEQVADLEVTERSKYYYFRAKSSYYLGDVEGAKMFWHSFLEC
DLYEDVRFPWEQEADLTNDTRLVLEMLQEEDDLTHMLGVYALTISGNRPELVLFHPLLDMSDWSYMEHLMFTNFDYFPDG
AIEQNGYLIAKAMIILKENGVLLNEENMALYKQMFSLVLIDAGKDLILGRYTIETVASAIAKLFLPHLKLELVEEFECSK
CARDIERVLSR

Sequences:

>Translated_491_residues
MEKDKKTPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRASELEPGEAVILCQLAICYTEIGQFHKSNQLLREVLE
QRNGNMEYCYYFIANNFAYMKDYRRALQYANRYLDSSTDGEYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKE
INRYLAEEDSAAACDILRKVIDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRNPGNLLGICDLFIYHFYKGNRKE
ADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEADDLLEQVADLEVTERSKYYYFRAKSSYYLGDVEGAKMFWHSFLEC
DLYEDVRFPWEQEADLTNDTRLVLEMLQEEDDLTHMLGVYALTISGNRPELVLFHPLLDMSDWSYMEHLMFTNFDYFPDG
AIEQNGYLIAKAMIILKENGVLLNEENMALYKQMFSLVLIDAGKDLILGRYTIETVASAIAKLFLPHLKLELVEEFECSK
CARDIERVLSR
>Mature_491_residues
MEKDKKTPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRASELEPGEAVILCQLAICYTEIGQFHKSNQLLREVLE
QRNGNMEYCYYFIANNFAYMKDYRRALQYANRYLDSSTDGEYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKE
INRYLAEEDSAAACDILRKVIDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRNPGNLLGICDLFIYHFYKGNRKE
ADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEADDLLEQVADLEVTERSKYYYFRAKSSYYLGDVEGAKMFWHSFLEC
DLYEDVRFPWEQEADLTNDTRLVLEMLQEEDDLTHMLGVYALTISGNRPELVLFHPLLDMSDWSYMEHLMFTNFDYFPDG
AIEQNGYLIAKAMIILKENGVLLNEENMALYKQMFSLVLIDAGKDLILGRYTIETVASAIAKLFLPHLKLELVEEFECSK
CARDIERVLSR

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57562; Mature: 57562

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKDKKTPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRASELEPGEAVILCQLAI
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHH
CYTEIGQFHKSNQLLREVLEQRNGNMEYCYYFIANNFAYMKDYRRALQYANRYLDSSTDG
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCC
EYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKEINRYLAEEDSAAACDILRKV
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRNPGNLLGICDLFIYHFYKGNRKE
HHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH
ADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEADDLLEQVADLEVTERSKYYYFRAKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEECCCCEEEEEECC
SYYLGDVEGAKMFWHSFLECDLYEDVRFPWEQEADLTNDTRLVLEMLQEEDDLTHMLGVY
CEEECCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
ALTISGNRPELVLFHPLLDMSDWSYMEHLMFTNFDYFPDGAIEQNGYLIAKAMIILKENG
EEEEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEHEEEEEECCC
VLLNEENMALYKQMFSLVLIDAGKDLILGRYTIETVASAIAKLFLPHLKLELVEEFECSK
EEECCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CARDIERVLSR
HHHHHHHHHCC
>Mature Secondary Structure
MEKDKKTPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRASELEPGEAVILCQLAI
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHH
CYTEIGQFHKSNQLLREVLEQRNGNMEYCYYFIANNFAYMKDYRRALQYANRYLDSSTDG
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCC
EYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKEINRYLAEEDSAAACDILRKV
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRNPGNLLGICDLFIYHFYKGNRKE
HHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH
ADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEADDLLEQVADLEVTERSKYYYFRAKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEECCCCEEEEEECC
SYYLGDVEGAKMFWHSFLECDLYEDVRFPWEQEADLTNDTRLVLEMLQEEDDLTHMLGVY
CEEECCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
ALTISGNRPELVLFHPLLDMSDWSYMEHLMFTNFDYFPDGAIEQNGYLIAKAMIILKENG
EEEEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEHEEEEEECCC
VLLNEENMALYKQMFSLVLIDAGKDLILGRYTIETVASAIAKLFLPHLKLELVEEFECSK
EEECCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CARDIERVLSR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]