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The map label for this gene is ydjC [C]

Identifier: 226224907

GI number: 226224907

Start: 2395433

End: 2396179

Strand: Reverse

Name: ydjC [C]

Synonym: Lm4b_02326

Alternate gene names: 226224907

Gene position: 2396179-2395433 (Counterclockwise)

Preceding gene: 226224908

Following gene: 226224906

Centisome position: 82.27

GC content: 37.08

Gene sequence:

>747_bases
ATGAAACTAATAATGAATGCAGATGATTTTGGGTTCACAAGAGCAATCAATTACGGAATCTTTGATGCGCACAATTTAGG
CGTTTTGACTTCCACGACATTAATGGTAACAATGCCTGCTTTTGAACATGCTGTAGACTTATCTAAGCAAACACCCACAC
TTGGAATAGGCTTACATCTCAATTTAACGTTAGGTAAGCCGTTGACAAATGGCGCATCTTTAGTGAACCAAGCTGGTGAA
TTAATAAAGCCAAAATTTATTACGCCTGAGTATCCCTATAATGAGGAAGAAGTGTATCAGGAATTTAAAGCGCAATATCA
TCGCTTTGTCACATTTATGAAAAAGAAACCGAGTCATTTGGATAGCCATCTCTTTTCTACAGATATCTATCCGGTTGCGG
CTAGTGCTGCGAAACGTCTTGCAGAAGAGGTTGAAATTCCACTTCGAAATCATGATACAGTGGGCTTTCAGCATGTCGAG
TTTATTTGGGAAAAACCGCTTGAAATTCCATATGGTGCGTATGAGAACCTAGATTATATTTATGACTATGCAGAATCGAT
TTTATGTTATGATTATGTTGAAATCATGACGCATCCTGGCTATCTCGATACGTTTATTCTGGAAAATTCAACATTCTCAA
CGCCACGCGCGAATGAATTAGAAAGTTTAATTTCTCCTAGAATGCGCCAGTTTTTAAACGAAAACAATGTAGAATTAATT
TCCTATCATGATATTCCAAAAAAATGA

Upstream 100 bases:

>100_bases
TGCGCAAGATCATCTGATGAATGCTTTTGTTTACTGCGATTTAGTTAAGTCAGTACTTAACTTGTATAAGCGTTTGGATG
AAAAGTAAGGAGTAGTGACA

Downstream 100 bases:

>100_bases
AATAGGTGATTAAAAATGCTAAATCAACGTCAAAAAAACATTTTAAGCACACTGTATAATGAAAATAATTGGCTACTTGG
GAAAAAATTAGCAGATTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKLIMNADDFGFTRAINYGIFDAHNLGVLTSTTLMVTMPAFEHAVDLSKQTPTLGIGLHLNLTLGKPLTNGASLVNQAGE
LIKPKFITPEYPYNEEEVYQEFKAQYHRFVTFMKKKPSHLDSHLFSTDIYPVAASAAKRLAEEVEIPLRNHDTVGFQHVE
FIWEKPLEIPYGAYENLDYIYDYAESILCYDYVEIMTHPGYLDTFILENSTFSTPRANELESLISPRMRQFLNENNVELI
SYHDIPKK

Sequences:

>Translated_248_residues
MKLIMNADDFGFTRAINYGIFDAHNLGVLTSTTLMVTMPAFEHAVDLSKQTPTLGIGLHLNLTLGKPLTNGASLVNQAGE
LIKPKFITPEYPYNEEEVYQEFKAQYHRFVTFMKKKPSHLDSHLFSTDIYPVAASAAKRLAEEVEIPLRNHDTVGFQHVE
FIWEKPLEIPYGAYENLDYIYDYAESILCYDYVEIMTHPGYLDTFILENSTFSTPRANELESLISPRMRQFLNENNVELI
SYHDIPKK
>Mature_248_residues
MKLIMNADDFGFTRAINYGIFDAHNLGVLTSTTLMVTMPAFEHAVDLSKQTPTLGIGLHLNLTLGKPLTNGASLVNQAGE
LIKPKFITPEYPYNEEEVYQEFKAQYHRFVTFMKKKPSHLDSHLFSTDIYPVAASAAKRLAEEVEIPLRNHDTVGFQHVE
FIWEKPLEIPYGAYENLDYIYDYAESILCYDYVEIMTHPGYLDTFILENSTFSTPRANELESLISPRMRQFLNENNVELI
SYHDIPKK

Specific function: Unknown

COG id: COG3394

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0249 family [H]

Homologues:

Organism=Escherichia coli, GI1788028, Length=259, Percent_Identity=34.3629343629344, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002509
- InterPro:   IPR006879
- InterPro:   IPR022948 [H]

Pfam domain/function: PF04794 YdjC [H]

EC number: NA

Molecular weight: Translated: 28452; Mature: 28452

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIMNADDFGFTRAINYGIFDAHNLGVLTSTTLMVTMPAFEHAVDLSKQTPTLGIGLHL
CEEEECCCCCCHHHEECCCCCCCCCCCEEEECEEEEEECHHHHHHHCCCCCCEEEEEEEE
NLTLGKPLTNGASLVNQAGELIKPKFITPEYPYNEEEVYQEFKAQYHRFVTFMKKKPSHL
EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
DSHLFSTDIYPVAASAAKRLAEEVEIPLRNHDTVGFQHVEFIWEKPLEIPYGAYENLDYI
HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
YDYAESILCYDYVEIMTHPGYLDTFILENSTFSTPRANELESLISPRMRQFLNENNVELI
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
SYHDIPKK
EECCCCCC
>Mature Secondary Structure
MKLIMNADDFGFTRAINYGIFDAHNLGVLTSTTLMVTMPAFEHAVDLSKQTPTLGIGLHL
CEEEECCCCCCHHHEECCCCCCCCCCCEEEECEEEEEECHHHHHHHCCCCCCEEEEEEEE
NLTLGKPLTNGASLVNQAGELIKPKFITPEYPYNEEEVYQEFKAQYHRFVTFMKKKPSHL
EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
DSHLFSTDIYPVAASAAKRLAEEVEIPLRNHDTVGFQHVEFIWEKPLEIPYGAYENLDYI
HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
YDYAESILCYDYVEIMTHPGYLDTFILENSTFSTPRANELESLISPRMRQFLNENNVELI
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
SYHDIPKK
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]