Click here to switch to the map view.

The map label for this gene is ykaA [H]

Identifier: 226224856

GI number: 226224856

Start: 2343730

End: 2344350

Strand: Direct

Name: ykaA [H]

Synonym: Lm4b_02275

Alternate gene names: 226224856

Gene position: 2343730-2344350 (Clockwise)

Preceding gene: 226224852

Following gene: 226224857

Centisome position: 80.47

GC content: 33.98

Gene sequence:

>621_bases
ATGGCTTTTAAAAATAAAAAAGACCGTTTTGCTTCGTTGTTGCATGACATTGCAGTAAATTTACATGAAGGTGCAAATTT
CTTTGCAACTTACAACATTAATTCGGTGGAGGATTTACATACTTTCTCGAATAAAATCAAAGAATATGAAACAGCTGGAG
ACTCCATGGTTCACAAAATGATTATGGAATTAAACGACGCTTTCATTACACCAATCGAACGTGAGGACATGTTAGAACTT
ACTAACCGCTTAGACGACGTAATGGATGCACTTGATGAAACAGCTTTCTCACTAGAAATCTGCCAAATCACTCATTATGA
TGAATACATGACTAAATTTATCCAAGCTATTCAAGCAAGCACTGTTGAAATTGAAAAAGCAGTTGACCTTGTTTTTGATA
AAAAACTAAAAGACGTTCGTAAACTTGCGATCCAAATTAAAGATTACGAATCTCAATGTGATGATGTTTACCGCGAATCA
CTAATCCAACTTTTCCAAAACGAAAAAGATCCAATTAAACTAATTCGTCTAAGAGAAGTTTATGAAAAATTAGAAGACAT
TGCTGATAGTTGTCAAAGCGTTGCGAATACGCTTGAATCAATTGTCATGAAAAATGCGTAA

Upstream 100 bases:

>100_bases
TATTTGTTTTCGTTAACTTATCGTTAAGAAAAAAGCTCCCTTTTCAAAGTAAAAGTGAGCTGATTATTAATGACCAAAAA
TGATCGGGGGAATTAAGAAA

Downstream 100 bases:

>100_bases
GGGGCCTAGATAGATGGAAGGAATGTTTCTCATCACCCTCGTCATCGTACTTGCCGCGCTAGCATTTGACCTGATCAACG
GGTTTCATGATACAGCTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MAFKNKKDRFASLLHDIAVNLHEGANFFATYNINSVEDLHTFSNKIKEYETAGDSMVHKMIMELNDAFITPIEREDMLEL
TNRLDDVMDALDETAFSLEICQITHYDEYMTKFIQAIQASTVEIEKAVDLVFDKKLKDVRKLAIQIKDYESQCDDVYRES
LIQLFQNEKDPIKLIRLREVYEKLEDIADSCQSVANTLESIVMKNA

Sequences:

>Translated_206_residues
MAFKNKKDRFASLLHDIAVNLHEGANFFATYNINSVEDLHTFSNKIKEYETAGDSMVHKMIMELNDAFITPIEREDMLEL
TNRLDDVMDALDETAFSLEICQITHYDEYMTKFIQAIQASTVEIEKAVDLVFDKKLKDVRKLAIQIKDYESQCDDVYRES
LIQLFQNEKDPIKLIRLREVYEKLEDIADSCQSVANTLESIVMKNA
>Mature_205_residues
AFKNKKDRFASLLHDIAVNLHEGANFFATYNINSVEDLHTFSNKIKEYETAGDSMVHKMIMELNDAFITPIEREDMLELT
NRLDDVMDALDETAFSLEICQITHYDEYMTKFIQAIQASTVEIEKAVDLVFDKKLKDVRKLAIQIKDYESQCDDVYRESL
IQLFQNEKDPIKLIRLREVYEKLEDIADSCQSVANTLESIVMKNA

Specific function: Unknown

COG id: COG1392

COG function: function code P; Phosphate transport regulator (distant homolog of PhoU)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0111 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012347
- InterPro:   IPR018445 [H]

Pfam domain/function: PF01865 PhoU_div [H]

EC number: NA

Molecular weight: Translated: 23904; Mature: 23773

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKNKKDRFASLLHDIAVNLHEGANFFATYNINSVEDLHTFSNKIKEYETAGDSMVHKM
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IMELNDAFITPIEREDMLELTNRLDDVMDALDETAFSLEICQITHYDEYMTKFIQAIQAS
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVEIEKAVDLVFDKKLKDVRKLAIQIKDYESQCDDVYRESLIQLFQNEKDPIKLIRLREV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
YEKLEDIADSCQSVANTLESIVMKNA
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFKNKKDRFASLLHDIAVNLHEGANFFATYNINSVEDLHTFSNKIKEYETAGDSMVHKM
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IMELNDAFITPIEREDMLELTNRLDDVMDALDETAFSLEICQITHYDEYMTKFIQAIQAS
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVEIEKAVDLVFDKKLKDVRKLAIQIKDYESQCDDVYRESLIQLFQNEKDPIKLIRLREV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
YEKLEDIADSCQSVANTLESIVMKNA
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]