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The map label for this gene is ydbO [H]

Identifier: 226224839

GI number: 226224839

Start: 2326849

End: 2327718

Strand: Direct

Name: ydbO [H]

Synonym: Lm4b_02258

Alternate gene names: 226224839

Gene position: 2326849-2327718 (Clockwise)

Preceding gene: 226224838

Following gene: 226224840

Centisome position: 79.89

GC content: 37.01

Gene sequence:

>870_bases
ATGGATGGATACAACGATTTAAAAAAGGCTGAAAAAGCGGCATTTTTGAGTATATTTGCCTATTTATTTCTAGCGGTTTT
AAAAATAGTTGCTGGGCAATTAGGAAACTCTGATGCCTTACTTGCAGATGGTTTGAATAATACGACTGATATTGTTGCTT
CTGTTGCGCTTTTAATTGGCCTTAGAATTTCTCGTATTCCACCTGATGCAGATCATTCATACGGACACCGACGGACTGAA
ACTATTAGCTCTTTAATCGCATCTATCATTATGTTTCTCGTTGGCGTGCAAGTTATTTGGAGTTCAATTGTTCATATTAT
CGAAAAAGAATTTGCAACACCCTCGATGTTAACTGCTGTTGTCGCGCTTTTTTCTGGTGTATTTATGTATGCTATTTACT
TATATAATCATCGACTTGCGAAAAAACTTGATAGCCAAGCTGTGCGAGCTGCTGCATATGATAATCGTTCCGACGCATTT
GTTAGTTTAGGTGCGTTTATCGGGATTATTGGGGCTGTTCTTGGTGTTCCTTGGCTTGATTCCGTGACGGCCTTTTTGGT
CGGTATTTTGATTGTTTATACTGCTATCAAAATTTTCTATGATGCTGCACATACCTTGACAGATGGTTTCGATGTTTCTA
AGCTCGAAACTATTCATGATTTAATTGCTTCTGTACCTGATGTCAAAAAAGTAATTGATATTAAAGCGCGAATGAATGGA
AATAAGATTTGGATCGATGCAACTATCGCTGTGGATCCTGAACTAAATGTAGTTAAAAGTCATGCAATCACCGAAATCGT
TGAACAAAAAATTCGTAACGAATACGAAGGTGCGTTCACTTTAGTTCATATTGAACCATTTTTTGAATAA

Upstream 100 bases:

>100_bases
AGTAAAAAATTTAGAGCATGTATTGATAGAGGCTTAGATTTCGTTGTCCCGCCATTCGTAGGCGGGACTTTTATGTTAAA
AAGAAAGGAGTACATACATA

Downstream 100 bases:

>100_bases
TATTCATTGTCAATAATCGTAAAGTCAACTATAATTTAGATTAAAGTATCATTTGCTGGGAGGGAATATTCGATGGGGCA
GAGAAACTAATTCACATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MDGYNDLKKAEKAAFLSIFAYLFLAVLKIVAGQLGNSDALLADGLNNTTDIVASVALLIGLRISRIPPDADHSYGHRRTE
TISSLIASIIMFLVGVQVIWSSIVHIIEKEFATPSMLTAVVALFSGVFMYAIYLYNHRLAKKLDSQAVRAAAYDNRSDAF
VSLGAFIGIIGAVLGVPWLDSVTAFLVGILIVYTAIKIFYDAAHTLTDGFDVSKLETIHDLIASVPDVKKVIDIKARMNG
NKIWIDATIAVDPELNVVKSHAITEIVEQKIRNEYEGAFTLVHIEPFFE

Sequences:

>Translated_289_residues
MDGYNDLKKAEKAAFLSIFAYLFLAVLKIVAGQLGNSDALLADGLNNTTDIVASVALLIGLRISRIPPDADHSYGHRRTE
TISSLIASIIMFLVGVQVIWSSIVHIIEKEFATPSMLTAVVALFSGVFMYAIYLYNHRLAKKLDSQAVRAAAYDNRSDAF
VSLGAFIGIIGAVLGVPWLDSVTAFLVGILIVYTAIKIFYDAAHTLTDGFDVSKLETIHDLIASVPDVKKVIDIKARMNG
NKIWIDATIAVDPELNVVKSHAITEIVEQKIRNEYEGAFTLVHIEPFFE
>Mature_289_residues
MDGYNDLKKAEKAAFLSIFAYLFLAVLKIVAGQLGNSDALLADGLNNTTDIVASVALLIGLRISRIPPDADHSYGHRRTE
TISSLIASIIMFLVGVQVIWSSIVHIIEKEFATPSMLTAVVALFSGVFMYAIYLYNHRLAKKLDSQAVRAAAYDNRSDAF
VSLGAFIGIIGAVLGVPWLDSVTAFLVGILIVYTAIKIFYDAAHTLTDGFDVSKLETIHDLIASVPDVKKVIDIKARMNG
NKIWIDATIAVDPELNVVKSHAITEIVEQKIRNEYEGAFTLVHIEPFFE

Specific function: Unknown

COG id: COG0053

COG function: function code P; Predicted Co/Zn/Cd cation transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]

Homologues:

Organism=Escherichia coli, GI1790349, Length=277, Percent_Identity=26.7148014440433, Blast_Score=101, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI193210990, Length=310, Percent_Identity=20.9677419354839, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002524 [H]

Pfam domain/function: PF01545 Cation_efflux [H]

EC number: NA

Molecular weight: Translated: 31659; Mature: 31659

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
>Mature Secondary Structure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CEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]