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The map label for this gene is ybbH [H]

Identifier: 226224262

GI number: 226224262

Start: 1694303

End: 1695154

Strand: Reverse

Name: ybbH [H]

Synonym: Lm4b_01672

Alternate gene names: 226224262

Gene position: 1695154-1694303 (Counterclockwise)

Preceding gene: 226224263

Following gene: 226224261

Centisome position: 58.2

GC content: 37.79

Gene sequence:

>852_bases
ATGAGTAATGGTAGTATTATCAATCGAATAGAAGGTATTTTAAATGATTTGCCGAAGTCAGAGAAAAAAATTGGCCAAGC
AGTATTAGCAAATCCAGAATTTACAACTACTGCATCGATTCATAAACTAGCTCAAAAAGCAGATGCAAGCGGTGCGGCCG
TTATCCGTTTCTGTAAATCAATCGGACTTCAAAGTTTTCCAGAACTAAAAAGACAATTATCATTAGATTTGGCTCAACCG
CAAAAGAAAGGCTATTATGATATTGAACCAAATGAAGATTTTCATACCATCACAGAAAAACTAGTTTCCAACATGATTCA
AACGATGAACGATACGGCTAGCCAACTAGATGAAGCCAAAGTTTTAGAGGCATGCGAATTACTCGGCGAAGCAGATACTA
TTTATACATACGGGGTCGGGGCTTCTTGGTTAGTAGCAGAAGATATTTCACAAAAGTGGCTGCGTGCAGGGAAACATGTT
TTAGCTACGCAAGATGCACATGTTCTAGCAATGGCTTTTGCAACGGGGAAGAAGAAAGCCGTTTTTATTGCTATTTCTAA
CAGTGGAGAAACATCAGAAGTCTTGCAACTCGTTGATCAAGCCAAACTGAACAACGTCATTGTTATTAGTCTTACACGTT
TTGGTAGCAATAAGCTGAAGGAAAAAGCAGATTTATCTTTAGAAACTTCTCGTGCTCCGGAAGCTGAAATTAGAAGTACA
GCAACAAGTTCAAGACAAGCACAATTGCTAGTAATTGACATTTTATTTTACTATTATGCATCCCATCACTACGACGAAAT
GATTCAACAAATTAAACATTCTCGAGAGGCCACGAATCGTTTTAGAGAATAA

Upstream 100 bases:

>100_bases
TGTTGCGAACTAATAATGGAAACTGCTGGCTTCTGGCTGGCAGTTTTATTTTTGACTAATTTTTTGGTATAATTACGGAA
AATGGAATGGAGAAAAGTTA

Downstream 100 bases:

>100_bases
AAGAAGATAGGTAGTAGCTTGATAATTAAAGCTACTGCCTATTTTTTTACTAGCAATTATAAATAAAAATTTTAATATTA
AAATTATATATTGAAATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSNGSIINRIEGILNDLPKSEKKIGQAVLANPEFTTTASIHKLAQKADASGAAVIRFCKSIGLQSFPELKRQLSLDLAQP
QKKGYYDIEPNEDFHTITEKLVSNMIQTMNDTASQLDEAKVLEACELLGEADTIYTYGVGASWLVAEDISQKWLRAGKHV
LATQDAHVLAMAFATGKKKAVFIAISNSGETSEVLQLVDQAKLNNVIVISLTRFGSNKLKEKADLSLETSRAPEAEIRST
ATSSRQAQLLVIDILFYYYASHHYDEMIQQIKHSREATNRFRE

Sequences:

>Translated_283_residues
MSNGSIINRIEGILNDLPKSEKKIGQAVLANPEFTTTASIHKLAQKADASGAAVIRFCKSIGLQSFPELKRQLSLDLAQP
QKKGYYDIEPNEDFHTITEKLVSNMIQTMNDTASQLDEAKVLEACELLGEADTIYTYGVGASWLVAEDISQKWLRAGKHV
LATQDAHVLAMAFATGKKKAVFIAISNSGETSEVLQLVDQAKLNNVIVISLTRFGSNKLKEKADLSLETSRAPEAEIRST
ATSSRQAQLLVIDILFYYYASHHYDEMIQQIKHSREATNRFRE
>Mature_282_residues
SNGSIINRIEGILNDLPKSEKKIGQAVLANPEFTTTASIHKLAQKADASGAAVIRFCKSIGLQSFPELKRQLSLDLAQPQ
KKGYYDIEPNEDFHTITEKLVSNMIQTMNDTASQLDEAKVLEACELLGEADTIYTYGVGASWLVAEDISQKWLRAGKHVL
ATQDAHVLAMAFATGKKKAVFIAISNSGETSEVLQLVDQAKLNNVIVISLTRFGSNKLKEKADLSLETSRAPEAEIRSTA
TSSRQAQLLVIDILFYYYASHHYDEMIQQIKHSREATNRFRE

Specific function: Represses The Expression Of The Hex Regulon (Zwf, Eda, Glp And Gap) (By Similarity). [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788159, Length=273, Percent_Identity=28.5714285714286, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788767, Length=283, Percent_Identity=27.5618374558304, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87082130, Length=270, Percent_Identity=28.5185185185185, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082369, Length=240, Percent_Identity=23.75, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31377; Mature: 31246

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNGSIINRIEGILNDLPKSEKKIGQAVLANPEFTTTASIHKLAQKADASGAAVIRFCKS
CCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
IGLQSFPELKRQLSLDLAQPQKKGYYDIEPNEDFHTITEKLVSNMIQTMNDTASQLDEAK
CCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLEACELLGEADTIYTYGVGASWLVAEDISQKWLRAGKHVLATQDAHVLAMAFATGKKKA
HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCCCEE
VFIAISNSGETSEVLQLVDQAKLNNVIVISLTRFGSNKLKEKADLSLETSRAPEAEIRST
EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHH
ATSSRQAQLLVIDILFYYYASHHYDEMIQQIKHSREATNRFRE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNGSIINRIEGILNDLPKSEKKIGQAVLANPEFTTTASIHKLAQKADASGAAVIRFCKS
CCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
IGLQSFPELKRQLSLDLAQPQKKGYYDIEPNEDFHTITEKLVSNMIQTMNDTASQLDEAK
CCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLEACELLGEADTIYTYGVGASWLVAEDISQKWLRAGKHVLATQDAHVLAMAFATGKKKA
HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCCCEE
VFIAISNSGETSEVLQLVDQAKLNNVIVISLTRFGSNKLKEKADLSLETSRAPEAEIRST
EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHH
ATSSRQAQLLVIDILFYYYASHHYDEMIQQIKHSREATNRFRE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]