Click here to switch to the map view.

The map label for this gene is yocD [H]

Identifier: 226224239

GI number: 226224239

Start: 1666378

End: 1667352

Strand: Reverse

Name: yocD [H]

Synonym: Lm4b_01649

Alternate gene names: 226224239

Gene position: 1667352-1666378 (Counterclockwise)

Preceding gene: 226224240

Following gene: 226224234

Centisome position: 57.24

GC content: 39.79

Gene sequence:

>975_bases
ATGATTCCAGCGAAATTAAAACAAGGGGATGAAATTCGGATTATTGCACCAAGTCGTTCTATCGGTATTATGGCTGACAA
TCAAGTGGAAATTGCCGTTAAGCGCCTAACGGACATGGGTTTTAAAGTCACTTTTGGCGAACATGTAGCAGAAATGGATT
GCATGATGAGTTCAAGCATTCGTTCGCGAGTTGCTGATATCCATGAAGCCTTTAATGATTCGAGTGTCAAAGCGATTTTG
ACGGTTATTGGTGGTTTTAATAGCAATCAATTGTTGCCATATTTGGATTATGAGTTAATTTCGGAAAATCCTAAAATTTT
ATGTGGTTTCTCCGATATCACGGCATTAGCAACCGCTATTTATACGCAAACGGAACTTATCACTTATTCAGGCGCTCATT
TTTCAAGTTTTTCAATGGAGAAAGGGCTGGACTACGTAATGGACTCATTTAGCAAGTGTTTATTGCAAAAAGAGCCGTTT
GCGCTTAAAGAAAGTGCTGCATGGAGTGACGATGAATGGTATTTGGACCAAGAGAACAGAAATTTTATTCCGAATGAGGG
ATTAGTTGTTATGCAACCTGGAGAGGCAGAAGGAATCATCATTGGCGGGAACTTATGCACGCTTAATTTACTCCAAGGAA
CCGAGTACATGCCTAACTTAGCGGGTACCATTTTATTTATTGAAGATGATTTTATGACTGTTCCAGAAACATTCGACCGG
GATTTAGAATCGCTATTAAGTCAACCCGGTGCAGGTGAGATAGAAGGGCTGGTAATCGGTCGTTTCCAACAGAAGACAGC
GATGACAGCGGAGAAATTAGCATATATTATTGAAACAAAAACGGCATTACAAAAAATCCCAGTTATATCTGGTGCGGATT
TTGGTCATACACAGCCAATTGCGACATTCCCGATTGGCGGAACTGCAAGAATTGATACAAATCAGACCGATAAAATTCAA
ATTATTAGGCATTAA

Upstream 100 bases:

>100_bases
TTGGCCCTGTAATTGTGTATTCTTATTTACAAGCTATTGGGATTTTGGATGACCATTTACGTTCATGCCCATTTCATACA
TTTAATAGGGAGGCGACGAA

Downstream 100 bases:

>100_bases
AAAAAGGCTGTCCAATGCGGACAGCCTTTTTAATATTTAACTTAAAGCGACATCTCGTTTTTTGAATAAGAAGAAAGTGA
AGAAAAGGATAATCGCTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MIPAKLKQGDEIRIIAPSRSIGIMADNQVEIAVKRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAIL
TVIGGFNSNQLLPYLDYELISENPKILCGFSDITALATAIYTQTELITYSGAHFSSFSMEKGLDYVMDSFSKCLLQKEPF
ALKESAAWSDDEWYLDQENRNFIPNEGLVVMQPGEAEGIIIGGNLCTLNLLQGTEYMPNLAGTILFIEDDFMTVPETFDR
DLESLLSQPGAGEIEGLVIGRFQQKTAMTAEKLAYIIETKTALQKIPVISGADFGHTQPIATFPIGGTARIDTNQTDKIQ
IIRH

Sequences:

>Translated_324_residues
MIPAKLKQGDEIRIIAPSRSIGIMADNQVEIAVKRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAIL
TVIGGFNSNQLLPYLDYELISENPKILCGFSDITALATAIYTQTELITYSGAHFSSFSMEKGLDYVMDSFSKCLLQKEPF
ALKESAAWSDDEWYLDQENRNFIPNEGLVVMQPGEAEGIIIGGNLCTLNLLQGTEYMPNLAGTILFIEDDFMTVPETFDR
DLESLLSQPGAGEIEGLVIGRFQQKTAMTAEKLAYIIETKTALQKIPVISGADFGHTQPIATFPIGGTARIDTNQTDKIQ
IIRH
>Mature_324_residues
MIPAKLKQGDEIRIIAPSRSIGIMADNQVEIAVKRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAIL
TVIGGFNSNQLLPYLDYELISENPKILCGFSDITALATAIYTQTELITYSGAHFSSFSMEKGLDYVMDSFSKCLLQKEPF
ALKESAAWSDDEWYLDQENRNFIPNEGLVVMQPGEAEGIIIGGNLCTLNLLQGTEYMPNLAGTILFIEDDFMTVPETFDR
DLESLLSQPGAGEIEGLVIGRFQQKTAMTAEKLAYIIETKTALQKIPVISGADFGHTQPIATFPIGGTARIDTNQTDKIQ
IIRH

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=296, Percent_Identity=26.0135135135135, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 35753; Mature: 35753

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPAKLKQGDEIRIIAPSRSIGIMADNQVEIAVKRLTDMGFKVTFGEHVAEMDCMMSSSI
CCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHH
RSRVADIHEAFNDSSVKAILTVIGGFNSNQLLPYLDYELISENPKILCGFSDITALATAI
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEECHHHHCCCCCEEEEHHHHHHHHHHH
YTQTELITYSGAHFSSFSMEKGLDYVMDSFSKCLLQKEPFALKESAAWSDDEWYLDQENR
HHHEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
NFIPNEGLVVMQPGEAEGIIIGGNLCTLNLLQGTEYMPNLAGTILFIEDDFMTVPETFDR
CCCCCCCEEEECCCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEEECCCEECCHHHHH
DLESLLSQPGAGEIEGLVIGRFQQKTAMTAEKLAYIIETKTALQKIPVISGADFGHTQPI
HHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
ATFPIGGTARIDTNQTDKIQIIRH
EEECCCCEEEECCCCCCEEEEEEC
>Mature Secondary Structure
MIPAKLKQGDEIRIIAPSRSIGIMADNQVEIAVKRLTDMGFKVTFGEHVAEMDCMMSSSI
CCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHH
RSRVADIHEAFNDSSVKAILTVIGGFNSNQLLPYLDYELISENPKILCGFSDITALATAI
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEECHHHHCCCCCEEEEHHHHHHHHHHH
YTQTELITYSGAHFSSFSMEKGLDYVMDSFSKCLLQKEPFALKESAAWSDDEWYLDQENR
HHHEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
NFIPNEGLVVMQPGEAEGIIIGGNLCTLNLLQGTEYMPNLAGTILFIEDDFMTVPETFDR
CCCCCCCEEEECCCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEEECCCEECCHHHHH
DLESLLSQPGAGEIEGLVIGRFQQKTAMTAEKLAYIIETKTALQKIPVISGADFGHTQPI
HHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
ATFPIGGTARIDTNQTDKIQIIRH
EEECCCCEEEECCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]