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The map label for this gene is radC

Identifier: 226224150

GI number: 226224150

Start: 1566940

End: 1567614

Strand: Reverse

Name: radC

Synonym: Lm4b_01560

Alternate gene names: 226224150

Gene position: 1567614-1566940 (Counterclockwise)

Preceding gene: 226224151

Following gene: 226224149

Centisome position: 53.82

GC content: 36.59

Gene sequence:

>675_bases
ATGTTGATACATGAAATATCAGAGAATGAAAAACCACGCGAAAAGCTACAGAATTATGGGATAGAAGCACTTTCATCTTC
GGAATTGGTTGCTTTAATTATTGAAACAGGGACTAAAAATGAGTCAGTTTTGACGATAGCTAATCGAATCATCATGAAAT
TCAAAAACGTGGGCGAAATGCAATATGCTTCTATAGAAGAATTTCAGTTAGTTAATGGTATCGGAATAGCAAAAGCTTCT
AAAATCATGGCTGCGATTGAACTTGGAAGACGTATCGGCATCGTAACGGAGCAGGAAGAAGTGGTTGTTAGGTGTCCCGA
AGATGCGGTAAAACTTGTAATGCCAGAGCTTGCTTTTCTTTTTCAAGAACATTTCCATTGTCTATTTTTAAATACCAAAA
ACCAAGTAATATATCGGCAAACGATTTTTGTTGGTGGTCTGAATGCTTCCATCGTTCATCCTAGAGAAGTTTTTAGATTA
GCGCTCAGGAAATCAGCAGCATCAATCATGTGCTTTCACAACCATCCATCTGGTGATCCGACTCCTTCTAGTGAAGACTT
GCTTGTAACAAAAAGGTTAGCTGAAGCTGGTAATATTGTCGGAATTACCTTACTAGATCATATTATCATTGGCAAGAATA
AGTATATTAGTTTGAAAGAAAAAGGTTACTTTTAA

Upstream 100 bases:

>100_bases
TATTAAATAAAGTGAAGAAAAATAAGCAAGTTCCATTTGTTCCGTATATATATGTTTCCTTTCTGCTGATTAGTATTTTG
ATAAAATAGGAGCTGTTCTT

Downstream 100 bases:

>100_bases
ATCAAGAATACTGTTCACAAAATGTCTACAGACAACGTTTGCTACCTTATGCTAAAGTGAGTACCAATAAAATGTAAAGG
TGGCTTATTGTGCAAAATAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MLIHEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKNVGEMQYASIEEFQLVNGIGIAKAS
KIMAAIELGRRIGIVTEQEEVVVRCPEDAVKLVMPELAFLFQEHFHCLFLNTKNQVIYRQTIFVGGLNASIVHPREVFRL
ALRKSAASIMCFHNHPSGDPTPSSEDLLVTKRLAEAGNIVGITLLDHIIIGKNKYISLKEKGYF

Sequences:

>Translated_224_residues
MLIHEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKNVGEMQYASIEEFQLVNGIGIAKAS
KIMAAIELGRRIGIVTEQEEVVVRCPEDAVKLVMPELAFLFQEHFHCLFLNTKNQVIYRQTIFVGGLNASIVHPREVFRL
ALRKSAASIMCFHNHPSGDPTPSSEDLLVTKRLAEAGNIVGITLLDHIIIGKNKYISLKEKGYF
>Mature_224_residues
MLIHEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKNVGEMQYASIEEFQLVNGIGIAKAS
KIMAAIELGRRIGIVTEQEEVVVRCPEDAVKLVMPELAFLFQEHFHCLFLNTKNQVIYRQTIFVGGLNASIVHPREVFRL
ALRKSAASIMCFHNHPSGDPTPSSEDLLVTKRLAEAGNIVGITLLDHIIIGKNKYISLKEKGYF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=36.7924528301887, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1788312, Length=106, Percent_Identity=46.2264150943396, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788997, Length=120, Percent_Identity=42.5, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI2367100, Length=106, Percent_Identity=42.4528301886792, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25064; Mature: 25064

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIHEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKNVGEM
CEECCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
QYASIEEFQLVNGIGIAKASKIMAAIELGRRIGIVTEQEEVVVRCPEDAVKLVMPELAFL
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEECCCCEEEECCHHHHHHHHHHHHHH
FQEHFHCLFLNTKNQVIYRQTIFVGGLNASIVHPREVFRLALRKSAASIMCFHNHPSGDP
HHHCCEEEEEECCCCEEEEEEEEEECCCCCEECHHHHHHHHHHHCCCEEEEEECCCCCCC
TPSSEDLLVTKRLAEAGNIVGITLLDHIIIGKNKYISLKEKGYF
CCCCCCHHHHHHHHHCCCEEEEHHHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure
MLIHEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVLTIANRIIMKFKNVGEM
CEECCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
QYASIEEFQLVNGIGIAKASKIMAAIELGRRIGIVTEQEEVVVRCPEDAVKLVMPELAFL
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEECCCCEEEECCHHHHHHHHHHHHHH
FQEHFHCLFLNTKNQVIYRQTIFVGGLNASIVHPREVFRLALRKSAASIMCFHNHPSGDP
HHHCCEEEEEECCCCEEEEEEEEEECCCCCEECHHHHHHHHHHHCCCEEEEEECCCCCCC
TPSSEDLLVTKRLAEAGNIVGITLLDHIIIGKNKYISLKEKGYF
CCCCCCHHHHHHHHHCCCEEEEHHHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA