Click here to switch to the map view.

The map label for this gene is yrbF [H]

Identifier: 226224130

GI number: 226224130

Start: 1548475

End: 1548804

Strand: Reverse

Name: yrbF [H]

Synonym: Lm4b_01539

Alternate gene names: 226224130

Gene position: 1548804-1548475 (Counterclockwise)

Preceding gene: 226224131

Following gene: 226224129

Centisome position: 53.17

GC content: 33.03

Gene sequence:

>330_bases
ATGGGCGGTATTGTAACATTTATACCAATTATCTTGATGATCGTTTTGTTTTACTTCTTATTAATCAGACCTCAACAAAA
ACGTCAAAAAGAAGTACAAAATATGCAAAGTAGTTTAGCAAAAGGTGATAAAATTATTACTATTGGTGGACTTCACGGTA
TTGTTGAAGCAATTGAAGATGGCACAGTCATTTTGAAATGCGGAAACAGCAAATTAACTTTTGACCGTAATGCAATCAGA
ACTGTACTTGAAAAAGGTAATGCAGTTTCTAATCCAGTTGTAGCAGAAACAACTTCTGATGACACTGAAGTTGTAGAAGA
CAACAAATAA

Upstream 100 bases:

>100_bases
TGCTGATTTTAGGGAAGAATTTTTTGAGCAATATGGATTCAATCGTCCTGATGCAAAAAATTTCTAAATATATATAAAGT
ATCGAAAGGAGTTGGAAAAT

Downstream 100 bases:

>100_bases
TACTTGAAATAAAAATGCCATTTCCCTTTAAACGGTGAAATGGCATTTTTTAACCATAAAAATAGAGCTTATACTTCCCA
TTTAAGCTTTTTTTAGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MGGIVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDKIITIGGLHGIVEAIEDGTVILKCGNSKLTFDRNAIR
TVLEKGNAVSNPVVAETTSDDTEVVEDNK

Sequences:

>Translated_109_residues
MGGIVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDKIITIGGLHGIVEAIEDGTVILKCGNSKLTFDRNAIR
TVLEKGNAVSNPVVAETTSDDTEVVEDNK
>Mature_108_residues
GGIVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDKIITIGGLHGIVEAIEDGTVILKCGNSKLTFDRNAIRT
VLEKGNAVSNPVVAETTSDDTEVVEDNK

Specific function: Unknown

COG id: COG1862

COG function: function code U; Preprotein translocase subunit YajC

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0092 family [H]

Homologues:

Organism=Escherichia coli, GI1786608, Length=84, Percent_Identity=38.0952380952381, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003849 [H]

Pfam domain/function: PF02699 YajC [H]

EC number: NA

Molecular weight: Translated: 11958; Mature: 11827

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS00147 ARGINASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGIVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDKIITIGGLHGIVEAIED
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCC
GTVILKCGNSKLTFDRNAIRTVLEKGNAVSNPVVAETTSDDTEVVEDNK
CEEEEEECCCCEEECHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
GGIVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDKIITIGGLHGIVEAIED
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCC
GTVILKCGNSKLTFDRNAIRTVLEKGNAVSNPVVAETTSDDTEVVEDNK
CEEEEEECCCCEEECHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]