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The map label for this gene is 226224035

Identifier: 226224035

GI number: 226224035

Start: 1449330

End: 1450997

Strand: Reverse

Name: 226224035

Synonym: Lm4b_01444

Alternate gene names: NA

Gene position: 1450997-1449330 (Counterclockwise)

Preceding gene: 226224036

Following gene: 226224034

Centisome position: 49.82

GC content: 35.61

Gene sequence:

>1668_bases
TTGACAATAAAAAAAGCGAAAAACATAAAAATCATTCCACTCGGCGGTGTCGATGAAAGTGGCAAAAATTTATATGTAGT
AGAAATAGACGAAGATATCTTTATATTAGATGCGGGCTTAATGTTCCCAGAAAATGAATTACTAGGAATTGATATTGTTA
TTCCAGATTTCAAATATTTAGAAGAAAATAAAGATCGTGTAAAAGCTGTTTTCCTAACACACGGTCACGAAGATGCAATT
GGAGCATTGCCATACTTGCTTCAAAAAATCAAAGCACCAGTTTATGGTACAGAATTAACGATAGCACTGGCAAAATCAGC
ACTTAAAGAACACCGTAAACTACGCTTCAAGAATTTCCATGTCGTTAACGAAGAAACAACTTTATCCTTTTCAAAAATTG
ATGTTTCCTTTTTCCGTACAACGCACACTATTCCTGATTCTGTTGGGATTGTTCTTGAAACAAGCGAAGGATCTATTGTT
TATACAGGGGATTTCAAATTCGATCAATCAGCGAAGGACGGCTATGCTTCTGATTTAAGCCACATTGCAGAATTTGGCGA
AAAAGGGGTACTAGCTTTACTTTCAGATAGTTCAGAGGCTGAGCACCCTGGAACAACGTCTAGCGATAGTTTAATTGAAG
AAGAAATTAGACATGCGTTCCGAATGGCAGACGGCAGAATTATCGTCGCTTGTGTAGCTTCTAATTTAATTCGCTTACAA
CAAGTACTCGATGCATCCGTTGCAACCAAACGTAAAGTCGCTATTGTTGGTAAAGAATTAGAGCGCGTTTTCGAAATTGC
TGGCAGTTTAGGTAAAATCGTCATTGAAGAAGACTTAATTGTTCCGTTAAAAGAACTTAAAAAATATAGCGATGACGAAA
TTACTATTATTGAAACAGGTAATCTAGGAGAACCAATTCAATCATTACAATTAATGACTAAAGGAAATCATCCACAATTC
AACATCAAACCTGGTGATACTGTTTACATTACGACGACGCCATCACCATCTCTTGAAACAATGATGGCTAAAACAATGGA
TATGCTCTATAAAGCAGGCGCGAAAGTGCTCACTATGAGTAACAATCTATTCATCTCTGGCCATGCAAGCCAAGAAGATT
TAAAATTAATGATTAACTTATTAAAACCAAGATATTTTGTTCCAGTTCACGGAGAATATCGCATGTTAATCAGTCACGCT
AAATTAGCTCATGAAGTTGGTATGGCAAAATCAGAAGTATTTATCGTAGGTAAAGGTGAAATTTTAGAATATAAAAATGA
TAAAATGACTGCTGGTAATCGCGTATACTCTGGTAATACTTTAATTGATGGTTTAGGTGTTGGTGATGTTGGTAACATCG
TGCTACGCGACCGTAAATTGCTCTCAGAAGACGGGATTTTCATTGTTGTAGTAACACTTAATCGTAAATCAAAAACCATT
ACTTCAGGACCAGAAATCATTTCACGTGGCTTTATTTATGTGAGAGAATCAGAACATTTGATTGAAGAATCTTCCAAAGT
TGTTACAAAAATTGTTGAAAAAAATCTTCAAGAAACCGGCTTTGAATGGGCGAAATTAAAACAAGACATTCGTGACCAAT
TAAATCGCTACTTATTTGAACAAACAAAACGACGTCCAATGATTTTACCAATTATTATGGAAGTCTAG

Upstream 100 bases:

>100_bases
CCTGTAAGACTACCACTTGTAGATTTGAATGCTGAACAAGGAACGAAATTACAAGCTATATTAGAAGGACTTTCTAAATA
GTTCAAAGGAGGTCTACGCT

Downstream 100 bases:

>100_bases
AATGAACTGCTGCACATTCGTGTGTGGCAGTTTTTTTCGTTTGAAAGTGAAATCAGACGGGAAAACAAGCTAGGAAGGAG
TGATTTAAATGGCAAAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J2 [H]

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYLEENKDRVKAVFLTHGHEDAI
GALPYLLQKIKAPVYGTELTIALAKSALKEHRKLRFKNFHVVNEETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIV
YTGDFKFDQSAKDGYASDLSHIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRHAFRMADGRIIVACVASNLIRLQ
QVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIEEDLIVPLKELKKYSDDEITIIETGNLGEPIQSLQLMTKGNHPQF
NIKPGDTVYITTTPSPSLETMMAKTMDMLYKAGAKVLTMSNNLFISGHASQEDLKLMINLLKPRYFVPVHGEYRMLISHA
KLAHEVGMAKSEVFIVGKGEILEYKNDKMTAGNRVYSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTLNRKSKTI
TSGPEIISRGFIYVRESEHLIEESSKVVTKIVEKNLQETGFEWAKLKQDIRDQLNRYLFEQTKRRPMILPIIMEV

Sequences:

>Translated_555_residues
MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYLEENKDRVKAVFLTHGHEDAI
GALPYLLQKIKAPVYGTELTIALAKSALKEHRKLRFKNFHVVNEETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIV
YTGDFKFDQSAKDGYASDLSHIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRHAFRMADGRIIVACVASNLIRLQ
QVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIEEDLIVPLKELKKYSDDEITIIETGNLGEPIQSLQLMTKGNHPQF
NIKPGDTVYITTTPSPSLETMMAKTMDMLYKAGAKVLTMSNNLFISGHASQEDLKLMINLLKPRYFVPVHGEYRMLISHA
KLAHEVGMAKSEVFIVGKGEILEYKNDKMTAGNRVYSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTLNRKSKTI
TSGPEIISRGFIYVRESEHLIEESSKVVTKIVEKNLQETGFEWAKLKQDIRDQLNRYLFEQTKRRPMILPIIMEV
>Mature_554_residues
TIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYLEENKDRVKAVFLTHGHEDAIG
ALPYLLQKIKAPVYGTELTIALAKSALKEHRKLRFKNFHVVNEETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIVY
TGDFKFDQSAKDGYASDLSHIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRHAFRMADGRIIVACVASNLIRLQQ
VLDASVATKRKVAIVGKELERVFEIAGSLGKIVIEEDLIVPLKELKKYSDDEITIIETGNLGEPIQSLQLMTKGNHPQFN
IKPGDTVYITTTPSPSLETMMAKTMDMLYKAGAKVLTMSNNLFISGHASQEDLKLMINLLKPRYFVPVHGEYRMLISHAK
LAHEVGMAKSEVFIVGKGEILEYKNDKMTAGNRVYSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTLNRKSKTIT
SGPEIISRGFIYVRESEHLIEESSKVVTKIVEKNLQETGFEWAKLKQDIRDQLNRYLFEQTKRRPMILPIIMEV

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61930; Mature: 61799

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYL
CCCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEECCCHHHH
EENKDRVKAVFLTHGHEDAIGALPYLLQKIKAPVYGTELTIALAKSALKEHRKLRFKNFH
HCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEEEE
VVNEETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIVYTGDFKFDQSAKDGYASDLS
EECCCCEEEEEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCHHHHHH
HIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRHAFRMADGRIIVACVASNLIRLQ
HHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
QVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIEEDLIVPLKELKKYSDDEITIIETG
HHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCEEEEECC
NLGEPIQSLQLMTKGNHPQFNIKPGDTVYITTTPSPSLETMMAKTMDMLYKAGAKVLTMS
CCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
NNLFISGHASQEDLKLMINLLKPRYFVPVHGEYRMLISHAKLAHEVGMAKSEVFIVGKGE
CCEEEECCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
ILEYKNDKMTAGNRVYSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTLNRKSKTI
EEEECCCCCCCCCEEEECCEEEECCCCCCCCCEEEECCHHHCCCCEEEEEEEECCCCCCC
TSGPEIISRGFIYVRESEHLIEESSKVVTKIVEKNLQETGFEWAKLKQDIRDQLNRYLFE
CCCHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
QTKRRPMILPIIMEV
HHCCCCEEEEEEECC
>Mature Secondary Structure 
TIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYL
CCCCCCCEEEEEECCCCCCCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEECCCHHHH
EENKDRVKAVFLTHGHEDAIGALPYLLQKIKAPVYGTELTIALAKSALKEHRKLRFKNFH
HCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEEEE
VVNEETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIVYTGDFKFDQSAKDGYASDLS
EECCCCEEEEEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCHHHHHH
HIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRHAFRMADGRIIVACVASNLIRLQ
HHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
QVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIEEDLIVPLKELKKYSDDEITIIETG
HHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCEEEEECC
NLGEPIQSLQLMTKGNHPQFNIKPGDTVYITTTPSPSLETMMAKTMDMLYKAGAKVLTMS
CCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
NNLFISGHASQEDLKLMINLLKPRYFVPVHGEYRMLISHAKLAHEVGMAKSEVFIVGKGE
CCEEEECCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
ILEYKNDKMTAGNRVYSGNTLIDGLGVGDVGNIVLRDRKLLSEDGIFIVVVTLNRKSKTI
EEEECCCCCCCCCEEEECCEEEECCCCCCCCCEEEECCHHHCCCCEEEEEEEECCCCCCC
TSGPEIISRGFIYVRESEHLIEESSKVVTKIVEKNLQETGFEWAKLKQDIRDQLNRYLFE
CCCHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
QTKRRPMILPIIMEV
HHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA