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The map label for this gene is opuCC

Identifier: 226224027

GI number: 226224027

Start: 1441153

End: 1442079

Strand: Reverse

Name: opuCC

Synonym: Lm4b_01435

Alternate gene names: 226224027

Gene position: 1442079-1441153 (Counterclockwise)

Preceding gene: 226224028

Following gene: 226224026

Centisome position: 49.51

GC content: 35.17

Gene sequence:

>927_bases
ATGAAGAAAAAATTTATCGCGTTATTCAGCGTATTACTACTAACTAGTTCTCTTTTCTTATCTAGCTGTTCTTTACCAGG
ACTTGGAGGCAGTTCCAAAGATACTATTCGCATCGGTGCAATGGCAACAACTGAATCTCAAATCGTTTCGAATATTTTAA
AAGAATTAATTGAACATGATACTGGCCTAAAAGTAGAAATCGTCAACAACCTTGGATCAACTATCGTTCAGCACCAAGCG
ATGTTAAATGGGGACGTAGATATTACTGCAACAAGATATACCGGTACAGATTTAGTTGGTCCACTTGGTGAAGAAGCAAT
TAAAGATCCAGAAAAAGCTTTAGCAGCTGTTAAGAAAGGTTTTGAAGAACGTTTCCACCAAACCTGGTTTGATTCTTACG
GTTTTGCTAATACGTATGTGTTTATGGTACGCCAAGACACTGCGAAAAAATACAATTTAAACACCGTAAGTGATATGCGA
AAAGTAGAAAATGAGCTCACAGCTGGTGTCGATAATTCTTGGATGGAACGTGAAGGCGATGGCTATAAAGCATTTTCAAA
AGCCTATGATATTGAATTCAAGAAAATATTTCCAATGCAAATTGGCTTAATCTACACAGCGCTTAAAAACAATCAAATGG
ATGTGGCGCTTGGTTATTCAACAGACGGACGTATCCCAACTTACAATTTAAAACTATTAAAAGATGATAAAAAATTCTTC
CCACCATATGATGCTTCAGCTCTAGCAACAGATGAAATTTTAAAGAAACATCCAGAATTAAAAACGACTATCAATAAATT
AAAAGGTAAAATTTCGACAGAAGAAATGCAAAAACTTAATTATGAAGCGGATGGCAAATTGAAAGAACCGTCCATCGTAG
CGCAAGAATTCTTGCAAAAAAATAATTACTTTGAAGGTAAAAACTAA

Upstream 100 bases:

>100_bases
GTTACCATTTTAGCCCTTGTAGTAGAATTCGCGCTTGGAAAATTAGAATATCGTCTAACTCCAAAAGCCATCCGCGAAGC
TCGGGAAGGGGGAGAATAAC

Downstream 100 bases:

>100_bases
GGAGGTGCCAAAAGATGGACACATTAAAACAATTAATTGATTATTACCAAACAAATGGAAGTTATGTCATGGAAGAGTTC
TGGCGGCATTTCTTGATGAG

Product: glycine betaine/carnitine/choline ABC transporter (osmoprotectant-binding protein)

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQA
MLNGDVDITATRYTGTDLVGPLGEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMR
KVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFPMQIGLIYTALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF
PPYDASALATDEILKKHPELKTTINKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKNNYFEGKN

Sequences:

>Translated_308_residues
MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQA
MLNGDVDITATRYTGTDLVGPLGEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMR
KVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFPMQIGLIYTALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF
PPYDASALATDEILKKHPELKTTINKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKNNYFEGKN
>Mature_308_residues
MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQA
MLNGDVDITATRYTGTDLVGPLGEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMR
KVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFPMQIGLIYTALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF
PPYDASALATDEILKKHPELKTTINKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKNNYFEGKN

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=306, Percent_Identity=23.8562091503268, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 34549; Mature: 34549

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATTESQIVSNILKELIEHD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCC
TGLKVEIVNNLGSTIVQHQAMLNGDVDITATRYTGTDLVGPLGEEAIKDPEKALAAVKKG
CCCEEEEHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHHH
FEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMRKVENELTAGVDNSWMEREGD
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCC
GYKAFSKAYDIEFKKIFPMQIGLIYTALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF
CHHHHHHHHCCCHHEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEECCCCCC
PPYDASALATDEILKKHPELKTTINKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQK
CCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH
NNYFEGKN
CCCCCCCC
>Mature Secondary Structure
MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATTESQIVSNILKELIEHD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCC
TGLKVEIVNNLGSTIVQHQAMLNGDVDITATRYTGTDLVGPLGEEAIKDPEKALAAVKKG
CCCEEEEHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHCCHHHHHHHHHHH
FEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMRKVENELTAGVDNSWMEREGD
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCC
GYKAFSKAYDIEFKKIFPMQIGLIYTALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF
CHHHHHHHHCCCHHEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEECCCCCC
PPYDASALATDEILKKHPELKTTINKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQK
CCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH
NNYFEGKN
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]