Click here to switch to the map view.

The map label for this gene is ymcA [H]

Identifier: 226224003

GI number: 226224003

Start: 1413469

End: 1413831

Strand: Direct

Name: ymcA [H]

Synonym: Lm4b_01411

Alternate gene names: 226224003

Gene position: 1413469-1413831 (Clockwise)

Preceding gene: 226224002

Following gene: 226224004

Centisome position: 48.53

GC content: 35.81

Gene sequence:

>363_bases
GTGACAGTTTCAAAAGACGAAATCATGAAAAAAGCTACCGAACTTCGTGATGCGCTTCAACAAACGGAAGAAGTATCGTT
TTACCGTCTTGCCGAGGAAAGAATCAATGCGAACTCCAAAGTAGCAGCGAAGGTTTCTAAAATAAAATTACTTCAAAAAG
AAGCAGTAAATTTAGAGCATTATCAAAAACTTGAAGCGATGAAACAAACCGAAAACCAAATTGATAACGTTCGCGCAGAT
ATTGATTCACTTCCGATTGTAACAGAATTTAGACGTGCCCAAGAAGACGCCAATGATCTTTTACAATCAATTACAACAGA
AATCACAACAAAAGTAACTACAGAGCTTGAAAAAGAAAATTAA

Upstream 100 bases:

>100_bases
ATCACACTTGACGAAAATACTGGAAAAGCACAAAAAATTGACCGAATTCTCATCAATGAAGACCACCCATTTTCCTTTGA
TTAAGAATGGAGATGAAATT

Downstream 100 bases:

>100_bases
CCACTTAAAACTGCCAAAACATCGGCAGTTTTTTCCTTTTGCGGTCGCAGGGAAATGAAACTTTATGCTATAATGAGAGG
ATGAAAAAGAAGTAAGGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MTVSKDEIMKKATELRDALQQTEEVSFYRLAEERINANSKVAAKVSKIKLLQKEAVNLEHYQKLEAMKQTENQIDNVRAD
IDSLPIVTEFRRAQEDANDLLQSITTEITTKVTTELEKEN

Sequences:

>Translated_120_residues
MTVSKDEIMKKATELRDALQQTEEVSFYRLAEERINANSKVAAKVSKIKLLQKEAVNLEHYQKLEAMKQTENQIDNVRAD
IDSLPIVTEFRRAQEDANDLLQSITTEITTKVTTELEKEN
>Mature_119_residues
TVSKDEIMKKATELRDALQQTEEVSFYRLAEERINANSKVAAKVSKIKLLQKEAVNLEHYQKLEAMKQTENQIDNVRADI
DSLPIVTEFRRAQEDANDLLQSITTEITTKVTTELEKEN

Specific function: May work together with ylbF to regulate community development [H]

COG id: COG4550

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016783
- InterPro:   IPR010368 [H]

Pfam domain/function: PF06133 DUF964 [H]

EC number: NA

Molecular weight: Translated: 13797; Mature: 13666

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSKDEIMKKATELRDALQQTEEVSFYRLAEERINANSKVAAKVSKIKLLQKEAVNLEH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
YQKLEAMKQTENQIDNVRADIDSLPIVTEFRRAQEDANDLLQSITTEITTKVTTELEKEN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TVSKDEIMKKATELRDALQQTEEVSFYRLAEERINANSKVAAKVSKIKLLQKEAVNLEH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
YQKLEAMKQTENQIDNVRADIDSLPIVTEFRRAQEDANDLLQSITTEITTKVTTELEKEN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]