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The map label for this gene is ymdB [H]

Identifier: 226224002

GI number: 226224002

Start: 1412649

End: 1413452

Strand: Direct

Name: ymdB [H]

Synonym: Lm4b_01410

Alternate gene names: 226224002

Gene position: 1412649-1413452 (Clockwise)

Preceding gene: 226224001

Following gene: 226224003

Centisome position: 48.5

GC content: 40.05

Gene sequence:

>804_bases
ATGAAAATACTATTTATCGGTGATGTTGTCGGTTCTATCGGCCGCGATGCCATAACAGAATATTTACCACAATTAAAGAA
AAAATATAAACCTACTATCACGGTGATTAACGGTGAAAATGCAGCGAGCGGGCGTGGGATTACAGAGAAAATTTATAAAG
ATTTTCTGGAGCTTGGTGCTAATGCTGTAACACTTGGGAACCATACATGGGATAATCGTGATATTTTTGAATTTATCGAT
GACGCTAAGTATTTAGTGCGCCCAGCAAACTTTCCAGATGATACTACACCTGGTACGGGAATGGTTTTTGTGAAAAGCAA
TCAGCATGAAATTGCCGTTATCAACATGCAAGGTCGGACTTTTCTAGCAGATTTAGACGATCCATTCCGCAAAATGGACA
CTTTGATAGAAGAAGCAAAAAAACGGACTAACATTATTTTTGTGGATTTTCATGCAGAAACTACTAGTGAAAAAGAAGCA
ATGGGTTGGTATTTAGACGGTCGTGTTACGGCTGTTGTTGGCACGCATACTCATGTGCAAACTTCGGATAACCGCATTCT
TCCAGAAGGAACAGCCTATCTGACGGATACTGGTATGACTGGTCCATACGATGCTATCCTTGGTATGGAAAAGGAAGCTG
TTATCCGTCGATTTAAAACAGCTTTACCAACTAGGTTCGAAGTTCCTAAAACTGGTCGAGCAGTCTTGTCGGGCTGTTTA
ATCACACTTGACGAAAATACTGGAAAAGCACAAAAAATTGACCGAATTCTCATCAATGAAGACCACCCATTTTCCTTTGA
TTAA

Upstream 100 bases:

>100_bases
AAACTTTATGCGTCCACGAAAAATTAGGCGAAATGAATGGCGTTTTTCGGGATGTTGCACTATTAGAACGTAGAAGTAAT
AGAAACGGAGAATAAACAAA

Downstream 100 bases:

>100_bases
GAATGGAGATGAAATTGTGACAGTTTCAAAAGACGAAATCATGAAAAAAGCTACCGAACTTCGTGATGCGCTTCAACAAA
CGGAAGAAGTATCGTTTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKILFIGDVVGSIGRDAITEYLPQLKKKYKPTITVINGENAASGRGITEKIYKDFLELGANAVTLGNHTWDNRDIFEFID
DAKYLVRPANFPDDTTPGTGMVFVKSNQHEIAVINMQGRTFLADLDDPFRKMDTLIEEAKKRTNIIFVDFHAETTSEKEA
MGWYLDGRVTAVVGTHTHVQTSDNRILPEGTAYLTDTGMTGPYDAILGMEKEAVIRRFKTALPTRFEVPKTGRAVLSGCL
ITLDENTGKAQKIDRILINEDHPFSFD

Sequences:

>Translated_267_residues
MKILFIGDVVGSIGRDAITEYLPQLKKKYKPTITVINGENAASGRGITEKIYKDFLELGANAVTLGNHTWDNRDIFEFID
DAKYLVRPANFPDDTTPGTGMVFVKSNQHEIAVINMQGRTFLADLDDPFRKMDTLIEEAKKRTNIIFVDFHAETTSEKEA
MGWYLDGRVTAVVGTHTHVQTSDNRILPEGTAYLTDTGMTGPYDAILGMEKEAVIRRFKTALPTRFEVPKTGRAVLSGCL
ITLDENTGKAQKIDRILINEDHPFSFD
>Mature_267_residues
MKILFIGDVVGSIGRDAITEYLPQLKKKYKPTITVINGENAASGRGITEKIYKDFLELGANAVTLGNHTWDNRDIFEFID
DAKYLVRPANFPDDTTPGTGMVFVKSNQHEIAVINMQGRTFLADLDDPFRKMDTLIEEAKKRTNIIFVDFHAETTSEKEA
MGWYLDGRVTAVVGTHTHVQTSDNRILPEGTAYLTDTGMTGPYDAILGMEKEAVIRRFKTALPTRFEVPKTGRAVLSGCL
ITLDENTGKAQKIDRILINEDHPFSFD

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29850; Mature: 29850

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILFIGDVVGSIGRDAITEYLPQLKKKYKPTITVINGENAASGRGITEKIYKDFLELGA
CEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
NAVTLGNHTWDNRDIFEFIDDAKYLVRPANFPDDTTPGTGMVFVKSNQHEIAVINMQGRT
CEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCE
FLADLDDPFRKMDTLIEEAKKRTNIIFVDFHAETTSEKEAMGWYLDGRVTAVVGTHTHVQ
EEECCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHCCEEECCEEEEEEECCEEEE
TSDNRILPEGTAYLTDTGMTGPYDAILGMEKEAVIRRFKTALPTRFEVPKTGRAVLSGCL
CCCCEECCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHCCCEECCCCCCHHHHCCEE
ITLDENTGKAQKIDRILINEDHPFSFD
EEEECCCCCHHHHHEEEECCCCCCCCC
>Mature Secondary Structure
MKILFIGDVVGSIGRDAITEYLPQLKKKYKPTITVINGENAASGRGITEKIYKDFLELGA
CEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
NAVTLGNHTWDNRDIFEFIDDAKYLVRPANFPDDTTPGTGMVFVKSNQHEIAVINMQGRT
CEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCE
FLADLDDPFRKMDTLIEEAKKRTNIIFVDFHAETTSEKEAMGWYLDGRVTAVVGTHTHVQ
EEECCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHCCEEECCEEEEEEECCEEEE
TSDNRILPEGTAYLTDTGMTGPYDAILGMEKEAVIRRFKTALPTRFEVPKTGRAVLSGCL
CCCCEECCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHCCCEECCCCCCHHHHCCEE
ITLDENTGKAQKIDRILINEDHPFSFD
EEEECCCCCHHHHHEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]