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The map label for this gene is xseB [H]

Identifier: 226223963

GI number: 226223963

Start: 1369411

End: 1369638

Strand: Direct

Name: xseB [H]

Synonym: Lm4b_01370

Alternate gene names: 226223963

Gene position: 1369411-1369638 (Clockwise)

Preceding gene: 226223962

Following gene: 226223964

Centisome position: 47.02

GC content: 36.4

Gene sequence:

>228_bases
GTGGCAACTAAAAAGAAAACTTTTGAAGAAGCAATTGCAGAATTAGAAACAATCGTAGAAGCACTCGAAAATGGTAGTGC
CTCACTTGAAGATTCTCTCGATATGTACCAAAAAGGAATCGAACTAACAAAATTGTGCCAAGATAAATTACAATCAGCAG
AAAAACGAATGGCAAAAGTAGTCACAGATGCAGGAGAAGAAATTCCTTTTGAAGCGGATGGTGAATAA

Upstream 100 bases:

>100_bases
GTTAAATCAGTGCAGGAGCTTGAAGTCGGCGATAATATCCAAGTGAAAATGCAAGGCGGACAGATAGAGGCACTCATTAC
CGCGAAGGAGGAAGATATAA

Downstream 100 bases:

>100_bases
ATTTGCAAGATTTAACCCTTTTTCTAGAACAATATAAAAAAGTGATTGATGAGTCGCTTTTTAAAGAAATAAGCGAGCGA
AATATCGAACCTAGACTAAA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE

Sequences:

>Translated_75_residues
MATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE
>Mature_74_residues
ATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 8267; Mature: 8136

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VTDAGEEIPFEADGE
HHHCCCCCCCCCCCC
>Mature Secondary Structure 
ATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKV
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VTDAGEEIPFEADGE
HHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]