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The map label for this gene is efp

Identifier: 226223956

GI number: 226223956

Start: 1363698

End: 1364255

Strand: Direct

Name: efp

Synonym: Lm4b_01363

Alternate gene names: 226223956

Gene position: 1363698-1364255 (Clockwise)

Preceding gene: 226223955

Following gene: 226223957

Centisome position: 46.82

GC content: 37.81

Gene sequence:

>558_bases
ATGATTTCAGTAAATGACTTTAAAACAGGGTTAACAATAGAAGTAGATAATGGTATTTGGCGTGTGCTAGATTTTCAACA
TGTAAAACCCGGAAAAGGAGCAGCATTCGTTCGTTCCAAATTACGTAACCTTCGTACAGGTGCAATCCAAGAAAAAACAT
TCCGTGGTGGCGAAAAAGTAGCAAAAGCGCAAATCGACAACCGTAAAATGGCCTACTTGTATGCTGACGGCACAAATCAC
GTATTCATGGATAATGAGTCTTATGAACAAATTGAGCTTCCAGAAGACCAAATTGCTCATGAACTTAAATTCCTAAAAGA
AAATATGGAAATTAATATTATCATGTATCAAGGCGAAACAATCGGTATTGATTTACCTAACACAGTAGAATTAGTTGTTA
CTGCAACTGATCCTGGAATTAAAGGTGATACTTCTTCAGGCGGTTCTAAACCAGCCACTCTTGAAACTGGTCTTGTTGTC
CAAGTGCCATTTTTCGTTAATGAAGGAGACAAACTAGTAATTAATACAACCGAAGCAGCGTATGTTTCTCGGGCGTAA

Upstream 100 bases:

>100_bases
TTCCTTTGTAACTTTGTGTGTTTTATGGTTAAATAAGGAAGAATGAGCAGTTTTAATATGCTCCAAATAAAGATACTTTG
CAAATTACAGGAGGAAAAAC

Downstream 100 bases:

>100_bases
GCAAGAATCGTTTACTACAGCTGGAGTTAATTCTTCAGCTGTTTTTCTATTTCTTAGCGCTTCCAGTACACCTTTTGAAT
AAAAAGTATGGTACAATAAG

Product: elongation factor P

Products: NA

Alternate protein names: EF-P

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MISVNDFKTGLTIEVDNGIWRVLDFQHVKPGKGAAFVRSKLRNLRTGAIQEKTFRGGEKVAKAQIDNRKMAYLYADGTNH
VFMDNESYEQIELPEDQIAHELKFLKENMEINIIMYQGETIGIDLPNTVELVVTATDPGIKGDTSSGGSKPATLETGLVV
QVPFFVNEGDKLVINTTEAAYVSRA

Sequences:

>Translated_185_residues
MISVNDFKTGLTIEVDNGIWRVLDFQHVKPGKGAAFVRSKLRNLRTGAIQEKTFRGGEKVAKAQIDNRKMAYLYADGTNH
VFMDNESYEQIELPEDQIAHELKFLKENMEINIIMYQGETIGIDLPNTVELVVTATDPGIKGDTSSGGSKPATLETGLVV
QVPFFVNEGDKLVINTTEAAYVSRA
>Mature_185_residues
MISVNDFKTGLTIEVDNGIWRVLDFQHVKPGKGAAFVRSKLRNLRTGAIQEKTFRGGEKVAKAQIDNRKMAYLYADGTNH
VFMDNESYEQIELPEDQIAHELKFLKENMEINIIMYQGETIGIDLPNTVELVVTATDPGIKGDTSSGGSKPATLETGLVV
QVPFFVNEGDKLVINTTEAAYVSRA

Specific function: Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing t

COG id: COG0231

COG function: function code J; Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the elongation factor P family

Homologues:

Organism=Escherichia coli, GI1790590, Length=180, Percent_Identity=43.3333333333333, Blast_Score=149, Evalue=8e-38,
Organism=Escherichia coli, GI87082061, Length=189, Percent_Identity=34.9206349206349, Blast_Score=120, Evalue=4e-29,

Paralogues:

None

Copy number: 1600 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): EFP_LISIN (P64033)

Other databases:

- EMBL:   AL596168
- PIR:   AG1606
- RefSeq:   NP_470728.1
- ProteinModelPortal:   P64033
- SMR:   P64033
- GeneID:   1129988
- GenomeReviews:   AL592022_GR
- KEGG:   lin:lin1392
- GenoList:   LIN1392
- HOGENOM:   HBG303311
- OMA:   WKVLEFL
- ProtClustDB:   PRK00529
- BioCyc:   LINN272626:LIN1392-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00141
- InterPro:   IPR015365
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR020599
- InterPro:   IPR013185
- InterPro:   IPR001059
- InterPro:   IPR013852
- InterPro:   IPR011768
- InterPro:   IPR014722
- InterPro:   IPR008991
- Gene3D:   G3DSA:2.40.50.140
- Gene3D:   G3DSA:2.30.30.30
- PIRSF:   PIRSF005901
- SMART:   SM00841
- TIGRFAMs:   TIGR00038

Pfam domain/function: PF01132 EFP; PF08207 EFP_N; PF09285 Elong-fact-P_C; SSF50249 Nucleic_acid_OB; SSF50104 Transl_SH3_like

EC number: NA

Molecular weight: Translated: 20466; Mature: 20466

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS01275 EFP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVNDFKTGLTIEVDNGIWRVLDFQHVKPGKGAAFVRSKLRNLRTGAIQEKTFRGGEKV
CCCCCCCCCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHCCCCHHH
AKAQIDNRKMAYLYADGTNHVFMDNESYEQIELPEDQIAHELKFLKENMEINIIMYQGET
EEEECCCCEEEEEEECCCCEEEECCCCCCEEECCHHHHHHHHHHHHCCCEEEEEEECCCE
IGIDLPNTVELVVTATDPGIKGDTSSGGSKPATLETGLVVQVPFFVNEGDKLVINTTEAA
EEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCEEEEEEEEECCCCEEEEEECCCE
YVSRA
EEECC
>Mature Secondary Structure
MISVNDFKTGLTIEVDNGIWRVLDFQHVKPGKGAAFVRSKLRNLRTGAIQEKTFRGGEKV
CCCCCCCCCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHCCCCHHH
AKAQIDNRKMAYLYADGTNHVFMDNESYEQIELPEDQIAHELKFLKENMEINIIMYQGET
EEEECCCCEEEEEEECCCCEEEECCCCCCEEECCHHHHHHHHHHHHCCCEEEEEEECCCE
IGIDLPNTVELVVTATDPGIKGDTSSGGSKPATLETGLVVQVPFFVNEGDKLVINTTEAA
EEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCEEEEEEEEECCCCEEEEEECCCE
YVSRA
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669