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The map label for this gene is codV

Identifier: 226223880

GI number: 226223880

Start: 1287872

End: 1288774

Strand: Direct

Name: codV

Synonym: Lm4b_01287

Alternate gene names: 226223880

Gene position: 1287872-1288774 (Clockwise)

Preceding gene: 226223879

Following gene: 226223881

Centisome position: 44.22

GC content: 37.76

Gene sequence:

>903_bases
ATGATACAAGAGGGGAAGTTAGAGCAACAGTTCTTTGACTATCTTCACTCAGAACGTAATTATTCAGTGAACACTAGTAC
AGCTTATGAAAATGATTTACTTGATTTTCGCCGCTTTTTAAATGAACAAGCTATTACCACATATCAGCAAGTTACTTTTC
TAGATGTGCGTATTTATTTGACGGAATTAAAGCAAAAATCTTTTTCTCGTACAACCGTAGCTAGAAAAATTTCAAGTTTA
CGGAGTTTTTACACTTTTCTTTTAAGAGAGAATGTTATTAACGAAAATCCGTTTACTTACGTATCACATGCGAAAAATCA
GTTAAGGCTTCCCAAATTTTTCTATTCAGAAGAAATGGAAGCTTTGTTTCAAGTGGTCTATGAAGATAATGAAACGCTTA
CATTGCGAGATAGAGTGCTTTTAGAGGTGTTATATGGTACGGGAATTCGGGTGAGTGAATGTGCTGGAATACTGTTGCCT
GACTTAGATACATCTTATCAAGCCATCCTCATACGCGGAAAAGGGAATAAAGAACGATATGTGCCATTCGGGGTGTATGC
AGAAGATGCGATTACAGATTATTTGCCAGAACGTGCCAATCTTATGTCTCGCTATAAAAAGTCACATGATGCTTTACTTG
TGAATCATTACGGTGATCCTTTGACGACCAGGGGCATTAGGTATTGCTTGTCGAAAATAATTAGTAAAGCTTCATTAACT
CGGAAAATTCATCCGCATATGTTACGCCACACATTTGCAACAGACTTACTTAATAACGGGGCGGATATGCGGACGGTACA
AGAGTTACTTGGGCACGCTAGCTTATCATCCACCCAGATCTATACGCACGTGACAAAAGAGCATTTAAAGTCTACTTATA
TGAAACATCATCCTAGGGCTTAA

Upstream 100 bases:

>100_bases
GTAAATGCAGATTAATTCAAAAAGTTGCGAAAAATGTATAAAATTATTGCAACGTGGATATTGATATGTTAACATGATAG
TGTTTGAGAGGTGTATACGT

Downstream 100 bases:

>100_bases
ATTTGGAGGAGGTTAAAGAAATGGAATTGCACGCTACAACGATATTTGCGGTTCAACATGACGGAAAAGCAGCGATGGCT
GGAGACGGTCAAGTGACGCT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MIQEGKLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSRTTVARKISSL
RSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLP
DLDTSYQAILIRGKGNKERYVPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLT
RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA

Sequences:

>Translated_300_residues
MIQEGKLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSRTTVARKISSL
RSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLP
DLDTSYQAILIRGKGNKERYVPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLT
RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA
>Mature_300_residues
MIQEGKLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSRTTVARKISSL
RSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLP
DLDTSYQAILIRGKGNKERYVPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLT
RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=35.958904109589, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1789261, Length=294, Percent_Identity=37.4149659863946, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1790768, Length=172, Percent_Identity=29.0697674418605, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35002; Mature: 35002

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQEGKLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYL
CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHH
ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY
HHHHHHHCCCCEEEHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCE
VPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLT
EEECCCHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIQEGKLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYL
CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHH
ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY
HHHHHHHCCCCEEEHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCE
VPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLT
EEECCCHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]