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The map label for this gene is smf [H]

Identifier: 226223877

GI number: 226223877

Start: 1283011

End: 1283871

Strand: Direct

Name: smf [H]

Synonym: Lm4b_01284

Alternate gene names: 226223877

Gene position: 1283011-1283871 (Clockwise)

Preceding gene: 226223876

Following gene: 226223878

Centisome position: 44.05

GC content: 35.66

Gene sequence:

>861_bases
ATGGATTTTAAACAACGACATACATGGCTCAAAATTGCTTCTTGTAAGTCTATTTCTGCTAAAAAAAGAGCCAGCATTTG
GCAAAAATTAACAGAATTCGACCAGTATGAAATGACAACACAAACATTTGCAGAATCTTTCTTTCCTGTGGATAAACTCG
CACAGATTCTAATGGAGCTAGAGACAGCTGAAGCGTGCTTTTTTGATGATGTTACCTTAATATGGATTTTAGATGATGCC
TATCCAGCGCTTTTAAGAGAAATTTATGAAGCGCCGCCAATTTTATTTTGTAAAGGAAATATTGATTTATTACAACAACA
AGCAATTGCCATCGTTGGTACAAGGCAGATGAGTGAATATGGTAGGAAAGCTTGTATGAAAATTGCTAGTGAACTTGCTG
AGAATAAGCTGACTATAGTTAGCGGGATGGCTATCGGAATCGACTCTACAGCCCATAGAGCCACTTTAAATAAACAAGGT
GCAACGATTGCAGTACTAGGTTCAGGTGTCAACAAAATTTATCCAAAGAAAAATGAACTTCTAGCGAAAGAAATTGTCAA
AGAAGGTTTGTTATTAAGTGAGTATTTACCCGATGAAGAAGCGAAAAGATGGCATTTTCCAGAAAGAAATCGAATTATTA
GCGGCTTGGCTATAGGAACAGTAATAATAGAAGCTGCCGAAAGAAGCGGTTCGTTGATTACTGCTGATATAGCTTTAGAA
CAAAACAGACAAGTTTTTGCTGTTCCAGGAAATATTTTTATTGATACATGGCAGGGGACGAATTATTTAATTCAAGAAGG
TGCCAAGTTAGTTATGAATTCGAACAATATAATAGAAGAATTTATTCAAATTAAGCCATAA

Upstream 100 bases:

>100_bases
TGGAAAATACGTTTTTTTATGCCGTTTTATAGGTTTTGGTCATTTTACAAAAAAGCCCAATGTTTGTACACTGGGAGTAA
CTATTACGGAGGTGCAACAG

Downstream 100 bases:

>100_bases
ATATACTGAAATTATCTTTTTTAAGTGATTTGACTTGCATTTCCTGATTTTTTGAGATAAGTTTGCTAAAGAAAGCTGAT
ATAAAACATCAAAAAATGGA

Product: polypeptide deformylase

Products: NA

Alternate protein names: DNA-processing chain A [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MDFKQRHTWLKIASCKSISAKKRASIWQKLTEFDQYEMTTQTFAESFFPVDKLAQILMELETAEACFFDDVTLIWILDDA
YPALLREIYEAPPILFCKGNIDLLQQQAIAIVGTRQMSEYGRKACMKIASELAENKLTIVSGMAIGIDSTAHRATLNKQG
ATIAVLGSGVNKIYPKKNELLAKEIVKEGLLLSEYLPDEEAKRWHFPERNRIISGLAIGTVIIEAAERSGSLITADIALE
QNRQVFAVPGNIFIDTWQGTNYLIQEGAKLVMNSNNIIEEFIQIKP

Sequences:

>Translated_286_residues
MDFKQRHTWLKIASCKSISAKKRASIWQKLTEFDQYEMTTQTFAESFFPVDKLAQILMELETAEACFFDDVTLIWILDDA
YPALLREIYEAPPILFCKGNIDLLQQQAIAIVGTRQMSEYGRKACMKIASELAENKLTIVSGMAIGIDSTAHRATLNKQG
ATIAVLGSGVNKIYPKKNELLAKEIVKEGLLLSEYLPDEEAKRWHFPERNRIISGLAIGTVIIEAAERSGSLITADIALE
QNRQVFAVPGNIFIDTWQGTNYLIQEGAKLVMNSNNIIEEFIQIKP
>Mature_286_residues
MDFKQRHTWLKIASCKSISAKKRASIWQKLTEFDQYEMTTQTFAESFFPVDKLAQILMELETAEACFFDDVTLIWILDDA
YPALLREIYEAPPILFCKGNIDLLQQQAIAIVGTRQMSEYGRKACMKIASELAENKLTIVSGMAIGIDSTAHRATLNKQG
ATIAVLGSGVNKIYPKKNELLAKEIVKEGLLLSEYLPDEEAKRWHFPERNRIISGLAIGTVIIEAAERSGSLITADIALE
QNRQVFAVPGNIFIDTWQGTNYLIQEGAKLVMNSNNIIEEFIQIKP

Specific function: Essential for efficient chromosomal DNA transformation but not required for plasmid transformation [H]

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=202, Percent_Identity=43.0693069306931, Blast_Score=162, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 32135; Mature: 32135

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKQRHTWLKIASCKSISAKKRASIWQKLTEFDQYEMTTQTFAESFFPVDKLAQILMEL
CCCCHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ETAEACFFDDVTLIWILDDAYPALLREIYEAPPILFCKGNIDLLQQQAIAIVGTRQMSEY
HHHHHHEECCEEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
GRKACMKIASELAENKLTIVSGMAIGIDSTAHRATLNKQGATIAVLGSGVNKIYPKKNEL
HHHHHHHHHHHHHHCCEEEEECEEECCCCCHHHHECCCCCCEEEEEECCCHHCCCCHHHH
LAKEIVKEGLLLSEYLPDEEAKRWHFPERNRIISGLAIGTVIIEAAERSGSLITADIALE
HHHHHHHCCCHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
QNRQVFAVPGNIFIDTWQGTNYLIQEGAKLVMNSNNIIEEFIQIKP
CCCEEEEECCCEEEECCCCCHHHHHCCCEEEECCCHHHHHHHHCCC
>Mature Secondary Structure
MDFKQRHTWLKIASCKSISAKKRASIWQKLTEFDQYEMTTQTFAESFFPVDKLAQILMEL
CCCCHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ETAEACFFDDVTLIWILDDAYPALLREIYEAPPILFCKGNIDLLQQQAIAIVGTRQMSEY
HHHHHHEECCEEEEEEECCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
GRKACMKIASELAENKLTIVSGMAIGIDSTAHRATLNKQGATIAVLGSGVNKIYPKKNEL
HHHHHHHHHHHHHHCCEEEEECEEECCCCCHHHHECCCCCCEEEEEECCCHHCCCCHHHH
LAKEIVKEGLLLSEYLPDEEAKRWHFPERNRIISGLAIGTVIIEAAERSGSLITADIALE
HHHHHHHCCCHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
QNRQVFAVPGNIFIDTWQGTNYLIQEGAKLVMNSNNIIEEFIQIKP
CCCEEEEECCCEEEECCCCCHHHHHCCCEEEECCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7768823; 7542800 [H]