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The map label for this gene is yubA [H]

Identifier: 226223213

GI number: 226223213

Start: 626898

End: 628070

Strand: Direct

Name: yubA [H]

Synonym: Lm4b_00610

Alternate gene names: 226223213

Gene position: 626898-628070 (Clockwise)

Preceding gene: 226223212

Following gene: 226223214

Centisome position: 21.52

GC content: 34.19

Gene sequence:

>1173_bases
GTGAAGGGGTCATTCACAAAGTTTAAACAATTTTTTATAGAAAACAAATTTGTGTTAGGGTTACTAATTTTTCTTTTAGT
AGCACTTGATATTTATGTATTAACTAAGATTGCCTTTATTTTTGATCCGTTAATGGTAATTCTTAAAACCGTTGCTGCAC
CAATCATTTTAGCTGGGATATCTTACTATTTATTTAATCCTATCATTGATTGGTTAGAGAAACATAAGTGGAAGCGAGGT
TGGGCGATTGCATTACTATACTTAGTGATTATCGGTTTACTCATTCTACTATTTAGTTTTGTCATTCCAGCTGTGAAAGA
TCAGATTGTTAGCTTGTTCAAATCATTCCCGGGGTATTGGGACCAAATCACACAGAAATTTGATGAGTTCAGTCGCTCGA
GCTTATTTGATCAAATAAAAGATAAATTAAATACGAACATGAGCGATATCATGAAGACTCTTTCCACAAAAGGAACATCT
GTAATTAATAGTGCTATTTCAAGTATTGGTAGTATTGTTGGAACGGTAACAGAGGTTGTTTTAGCGATTGTAACTACGCC
GCTTGTTTTATTCTACTTGTTAAAAGATGGAAAAAAATTACCAGACTTCCTACTAAAAATGTTACCAGTAAATGGTCGTG
CGCATACTCGCCAAGTACTTGGTGAAGCAAACCACCAAATTAGTTCATATATTCGTGGACAAATTATTGTAAGTTTGTGT
ATTGGTATTTTGCTATTTATCGGTTATTTAATTATCGGTCTACCATATGCATTAACACTTGCTATTATTGCAGCTTGTAC
TAGTATTGTCCCCTATTTAGGACCAGCAATTGCGATTACACCAGCGATTATTATCGCGATTGTTACTTCACCTTGGTTAT
TAATTAAATTAATCATAGTCTGGTGTGTCGTTCAATTACTTGAAGGTAAATTCATTTCTCCTCAAGTCATGGGTAAAACA
CTAAAAGTACATCCAATCACGATTTTATTCGTTATTTTAGTAGCTGGAAATCTATTCGGTGTACTGGGTGTTATCTTTGC
AGTACCAGGTTATGCGGTACTTAAAGTCATCGTAACGCATGTATTTATTTGGTTCAAACGAATCTCTGGGCTTTACGGGG
AACAACCTGAAAGTGAATATGTAGAATCACCAACAGAAGAAAAAGAATTATAA

Upstream 100 bases:

>100_bases
TGATTTTTTCCAAATTTATGGGTAATTTAATGAGAACGAGGGTATTAATCTATATAATAGTACCAAACGAAAATAAATTT
AGACAAAAGAGGGTGGTAAA

Downstream 100 bases:

>100_bases
AATAAAAACACTATTAGTTAGAAAATATTTTTCTGCTAATAGTGTTTTTTTGTTGTGTTAAAACTAATGTTCACAAAAAA
GACATAATTTTTCTCTTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MKGSFTKFKQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKHKWKRG
WAIALLYLVIIGLLILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTS
VINSAISSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLC
IGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKT
LKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRISGLYGEQPESEYVESPTEEKEL

Sequences:

>Translated_390_residues
MKGSFTKFKQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKHKWKRG
WAIALLYLVIIGLLILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTS
VINSAISSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLC
IGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKT
LKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRISGLYGEQPESEYVESPTEEKEL
>Mature_390_residues
MKGSFTKFKQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKHKWKRG
WAIALLYLVIIGLLILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTS
VINSAISSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLC
IGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKT
LKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRISGLYGEQPESEYVESPTEEKEL

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=314, Percent_Identity=29.2993630573248, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI87082271, Length=307, Percent_Identity=22.8013029315961, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 43382; Mature: 43382

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHCCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]