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The map label for this gene is ltrA

Identifier: 226223014

GI number: 226223014

Start: 414259

End: 415374

Strand: Reverse

Name: ltrA

Synonym: Lm4b_00407

Alternate gene names: NA

Gene position: 415374-414259 (Counterclockwise)

Preceding gene: 226223020

Following gene: 226223007

Centisome position: 14.26

GC content: 37.63

Gene sequence:

>1116_bases
GTGGCGGAAAGAAAAGTTTCTTGGCTAGAACTATTTTTTGATTTAATATTCGTAACTGCTGTTGCTTCAACGACGCATCT
GTTACTTAGCGTCGATAATCATCCGGATAAAACAGCTGTTTATTTTGGCGAATATTTATTGATGGTCACGCCGATGTTTT
GGGCGTGGGTTGGGCAGACAATGTTTTTCAATCGCTTCGGTGAGAAAATCAAACTACCCGAACTTTATATGTTGCCGCAA
ATGTTTTTCTTAATTTTGATGACAGCGAGTTTTGATTTAACGTTTTCAAATACGTATTATACTTTTTTAATTGGTTATTT
AGGTATTCGCTTAATTACGGTTATCCAGTATTTTGTTATTAGTAAGCAGTTGACGGGAAATGCGCGGAAAGTGGCGATAC
TTCTTGGGAGTGTTTTTCTACTAGGTGTTTTGACAACTGCGACTTCGGTGTTTTTTGAAGGATTTGCGCGTTATTTAGTG
ATGTATCTTGGGATTGCAGTTGATATTATTTTACCGTTATTTTTAGCTAAAACATTGCGCAAAGTGCCGGTTGATTTTCC
ACATCTTGCGGAACGTTTTGGATTATTTGTTATCATCACATTTGGTGAAAGTATTGTTGCGATTACGACTATTTTAGTTG
GGCACACGCTTGATCCCTATACGATTGGGTACACGTTGCTTGGCTTTTTAATTATTTGTACGCTTTGGGCATCGTATTTC
CATAGCTTTGAGAAAATTGTCGACCACCATAAAGAAACCCATGGCCAGTACTTAATTTATGGACATTTCTTTATTATTAT
TTCAGTGATGTTACTTGCGGCGAATGTGCATTTGTTGTTCGAGGGGCATTTGGAACGCAATGTTTTGTTATTGATGTTGT
TTGGTTCTGTAGCTGTGTTTTTCGTTTCGAAACAATTTGTTTTTGCTGCTCATAAAAAGGCCGAAGTGACATTTTCTTTT
TGGAAAGATGCGTTGTTATTGTTACTTCTAGTGGGGCTGTTTTTTGTTAATTTGTATAGTGATTTTCCTCTATTTGTTAG
TTTTGTGAGTATTTGGGTTTGTGCGCTGGTGGATCTTGGTTTGCAGTTTGGGACTTCGCGGTCGGCACGAATGTAA

Upstream 100 bases:

>100_bases
ATTTTGTCCTTCCATTATACTTTTCACGGCGAGCAACTGTCAAAAGGCAAGCGGATTCACGTGGTATACTTGAAAAAAGA
AATAATAATGGGGTGAGATT

Downstream 100 bases:

>100_bases
ATAAAAAAAGATGAGCATTTCGCTCACCTTTCCTCGCCTGTGTCTTGGTGCCTTGTGTAATCTGTAAAAATAAATAGGCC
CATTAAAAAGCTTATTAAAC

Product: low temperature requirement protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MAERKVSWLELFFDLIFVTAVASTTHLLLSVDNHPDKTAVYFGEYLLMVTPMFWAWVGQTMFFNRFGEKIKLPELYMLPQ
MFFLILMTASFDLTFSNTYYTFLIGYLGIRLITVIQYFVISKQLTGNARKVAILLGSVFLLGVLTTATSVFFEGFARYLV
MYLGIAVDIILPLFLAKTLRKVPVDFPHLAERFGLFVIITFGESIVAITTILVGHTLDPYTIGYTLLGFLIICTLWASYF
HSFEKIVDHHKETHGQYLIYGHFFIIISVMLLAANVHLLFEGHLERNVLLLMLFGSVAVFFVSKQFVFAAHKKAEVTFSF
WKDALLLLLLVGLFFVNLYSDFPLFVSFVSIWVCALVDLGLQFGTSRSARM

Sequences:

>Translated_371_residues
MAERKVSWLELFFDLIFVTAVASTTHLLLSVDNHPDKTAVYFGEYLLMVTPMFWAWVGQTMFFNRFGEKIKLPELYMLPQ
MFFLILMTASFDLTFSNTYYTFLIGYLGIRLITVIQYFVISKQLTGNARKVAILLGSVFLLGVLTTATSVFFEGFARYLV
MYLGIAVDIILPLFLAKTLRKVPVDFPHLAERFGLFVIITFGESIVAITTILVGHTLDPYTIGYTLLGFLIICTLWASYF
HSFEKIVDHHKETHGQYLIYGHFFIIISVMLLAANVHLLFEGHLERNVLLLMLFGSVAVFFVSKQFVFAAHKKAEVTFSF
WKDALLLLLLVGLFFVNLYSDFPLFVSFVSIWVCALVDLGLQFGTSRSARM
>Mature_370_residues
AERKVSWLELFFDLIFVTAVASTTHLLLSVDNHPDKTAVYFGEYLLMVTPMFWAWVGQTMFFNRFGEKIKLPELYMLPQM
FFLILMTASFDLTFSNTYYTFLIGYLGIRLITVIQYFVISKQLTGNARKVAILLGSVFLLGVLTTATSVFFEGFARYLVM
YLGIAVDIILPLFLAKTLRKVPVDFPHLAERFGLFVIITFGESIVAITTILVGHTLDPYTIGYTLLGFLIICTLWASYFH
SFEKIVDHHKETHGQYLIYGHFFIIISVMLLAANVHLLFEGHLERNVLLLMLFGSVAVFFVSKQFVFAAHKKAEVTFSFW
KDALLLLLLVGLFFVNLYSDFPLFVSFVSIWVCALVDLGLQFGTSRSARM

Specific function: Unknown

COG id: COG4292

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010640 [H]

Pfam domain/function: PF06772 LtrA [H]

EC number: NA

Molecular weight: Translated: 42350; Mature: 42219

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERKVSWLELFFDLIFVTAVASTTHLLLSVDNHPDKTAVYFGEYLLMVTPMFWAWVGQT
CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MFFNRFGEKIKLPELYMLPQMFFLILMTASFDLTFSNTYYTFLIGYLGIRLITVIQYFVI
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH
SKQLTGNARKVAILLGSVFLLGVLTTATSVFFEGFARYLVMYLGIAVDIILPLFLAKTLR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVPVDFPHLAERFGLFVIITFGESIVAITTILVGHTLDPYTIGYTLLGFLIICTLWASYF
HCCCCCHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
HSFEKIVDHHKETHGQYLIYGHFFIIISVMLLAANVHLLFEGHLERNVLLLMLFGSVAVF
HHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHH
FVSKQFVFAAHKKAEVTFSFWKDALLLLLLVGLFFVNLYSDFPLFVSFVSIWVCALVDLG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LQFGTSRSARM
HHCCCCCCCCC
>Mature Secondary Structure 
AERKVSWLELFFDLIFVTAVASTTHLLLSVDNHPDKTAVYFGEYLLMVTPMFWAWVGQT
CCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MFFNRFGEKIKLPELYMLPQMFFLILMTASFDLTFSNTYYTFLIGYLGIRLITVIQYFVI
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH
SKQLTGNARKVAILLGSVFLLGVLTTATSVFFEGFARYLVMYLGIAVDIILPLFLAKTLR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVPVDFPHLAERFGLFVIITFGESIVAITTILVGHTLDPYTIGYTLLGFLIICTLWASYF
HCCCCCHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
HSFEKIVDHHKETHGQYLIYGHFFIIISVMLLAANVHLLFEGHLERNVLLLMLFGSVAVF
HHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHH
FVSKQFVFAAHKKAEVTFSFWKDALLLLLLVGLFFVNLYSDFPLFVSFVSIWVCALVDLG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LQFGTSRSARM
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9204561; 11481432 [H]