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The map label for this gene is yobV [H]

Identifier: 226223003

GI number: 226223003

Start: 403567

End: 404487

Strand: Reverse

Name: yobV [H]

Synonym: Lm4b_00395

Alternate gene names: 226223003

Gene position: 404487-403567 (Counterclockwise)

Preceding gene: 226223007

Following gene: 226222998

Centisome position: 13.89

GC content: 42.13

Gene sequence:

>921_bases
ATGAAAATCGAGCGACTCATCGGAATTATCATGCTGCTTCTCCAACGCGAGCTAGTCAGTGCTTCTGAAATGGCTACAAT
GTTCGAGGTTTCCAAACGTACTATTTTCCGCGACATTGACACACTCGCGATGGCGAATATCCCGATTTACACAATTGCCG
GAACAAAGGGTGGCATTGGTATTATGCCTACCTACAAAGTCGATAAAAAGCTTCTCACAGCGGATGATTTAACCGCGATT
ATTGCTAGTTTGGACGGAATGGAACAGTTGCTTTCTTCCGCCGAAACCAAGAAAACCCTCCAAAAAATGAAAAACATGCT
CGACCATTCAAGCGAACCGCCTAAAAGTTCCATTTCGCTCGATTTCTCCAATTTGTCCATGAAAAACGAATTAAACGCTA
AAGTCGAAAGTTTATATTTAGCGATTAAAAAACATCAACTCGTAGAACTCAGCTATATTGATCGAACGGGCAACCAAACC
ATTCGTAAAACTGAGCCTTATCACCTCCTGTTTAGGAATCGTTCTTGGTATTTGCAAGGTTACAGTTTGGAACGCAGCGA
TTTTCGAACATTTAAAATGTCGCGGATTGTTGAACTAAAAACGCTAGAAGAAACGTTTGAAGCTCGCCCTTTTAGTGTAA
AACCGTTTGGCGCCCCACCCGACAGACCGATGTTTTTGATGCATGAAGTCAACTTAATTGTCGATAAAATTGCCCGCGAG
CAAATCATCGAGCGCTTTGATCTAGTCGAAATCTCGCAGCAAGATGACGCACACTTTTTGGCAAAAGTGACGCTTCCTGA
TCACGAGGCTGGGTACCGCTTTTTGCTCCAACTTGGAACGCATGTAACCATTCAAAACCGTGATGACTTTTACGATAATT
TTGTTGACTACTTAAAGGAAATCCAAGGAAAATATATCTAA

Upstream 100 bases:

>100_bases
TATTTCCCTCCAAAAAGTTACTTAACTTTGATATGATGTAACTATAACACACGAATGATGACAACTGTCTGTCATCATTC
CAAAAACAAAGGAGAAAAAA

Downstream 100 bases:

>100_bases
AAATGGCTCTGCTAATTGTTTAGCAGAGCCATTTGATGTTAATCTTTATATTTATAATCCAAATCTTGATAAGCTGTTTG
GTACGGTCCACCATCAGCTA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAMANIPIYTIAGTKGGIGIMPTYKVDKKLLTADDLTAI
IASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISLDFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQT
IRKTEPYHLLFRNRSWYLQGYSLERSDFRTFKMSRIVELKTLEETFEARPFSVKPFGAPPDRPMFLMHEVNLIVDKIARE
QIIERFDLVEISQQDDAHFLAKVTLPDHEAGYRFLLQLGTHVTIQNRDDFYDNFVDYLKEIQGKYI

Sequences:

>Translated_306_residues
MKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAMANIPIYTIAGTKGGIGIMPTYKVDKKLLTADDLTAI
IASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISLDFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQT
IRKTEPYHLLFRNRSWYLQGYSLERSDFRTFKMSRIVELKTLEETFEARPFSVKPFGAPPDRPMFLMHEVNLIVDKIARE
QIIERFDLVEISQQDDAHFLAKVTLPDHEAGYRFLLQLGTHVTIQNRDDFYDNFVDYLKEIQGKYI
>Mature_306_residues
MKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAMANIPIYTIAGTKGGIGIMPTYKVDKKLLTADDLTAI
IASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISLDFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQT
IRKTEPYHLLFRNRSWYLQGYSLERSDFRTFKMSRIVELKTLEETFEARPFSVKPFGAPPDRPMFLMHEVNLIVDKIARE
QIIERFDLVEISQQDDAHFLAKVTLPDHEAGYRFLLQLGTHVTIQNRDDFYDNFVDYLKEIQGKYI

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 35312; Mature: 35312

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAMANIPIYTIAGTKGGIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
IMPTYKVDKKLLTADDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISL
CCCCHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
DFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQTIRKTEPYHLLFRNRSWYLQG
EHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCEEEEEECCEEEEEE
YSLERSDFRTFKMSRIVELKTLEETFEARPFSVKPFGAPPDRPMFLMHEVNLIVDKIARE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEHHHHHHHHHHHHHHH
QIIERFDLVEISQQDDAHFLAKVTLPDHEAGYRFLLQLGTHVTIQNRDDFYDNFVDYLKE
HHHHHHCHHEECCCCCCEEEEEEECCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH
IQGKYI
HCCCCC
>Mature Secondary Structure
MKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAMANIPIYTIAGTKGGIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
IMPTYKVDKKLLTADDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISL
CCCCHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
DFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQTIRKTEPYHLLFRNRSWYLQG
EHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCEEEEEECCEEEEEE
YSLERSDFRTFKMSRIVELKTLEETFEARPFSVKPFGAPPDRPMFLMHEVNLIVDKIARE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEHHHHHHHHHHHHHHH
QIIERFDLVEISQQDDAHFLAKVTLPDHEAGYRFLLQLGTHVTIQNRDDFYDNFVDYLKE
HHHHHHCHHEECCCCCCEEEEEEECCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH
IQGKYI
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]