Click here to switch to the map view.

The map label for this gene is 226222863

Identifier: 226222863

GI number: 226222863

Start: 251312

End: 252385

Strand: Direct

Name: 226222863

Synonym: Lm4b_00254

Alternate gene names: NA

Gene position: 251312-252385 (Clockwise)

Preceding gene: 226222862

Following gene: 226222864

Centisome position: 8.63

GC content: 35.94

Gene sequence:

>1074_bases
ATGCTTACATGGGTAATTCGAGTGTGTTTTTTAATTCTAGGTGGGACAACGGGAGTCTTTTCACTACCTGCTCTATGGGT
GAAACTTGGAATAGGTCACATTCTGCTAATTAATAATCCTTATACTGATGCTCTGATTGGTGCACTTATATTTTATCTTA
TTACTTTCTGGGCGGTGAAATATGTAGAAGCCGCACTTAATTGGTTAGAGGAAAAGTTAGCTAAAATTGCTATTGCAACC
CTTGTTTATGGGGGACTTGGTTTATTTGTAGGTTTGGTCATTGCGTTTTTCGCGAGCAATGCATTAAGTCAAACAAATAT
TCCGCTTTTAAATTCAGTAGTACCAGTTATTTTAACATTAGTTCTAGGTTATTTAGGGTTCCGTATCGGAATTAGTCGTC
GCAACGAATTTGGAAATTTTGTCAATAACAGAAATGCAAAGAAAAGAACACCAGAAGAAGAGAAAACAGAAGAGAAATCT
AAGAAAACATATAAAATTTTGGATACGAGTGTAATTATTGATGGTCGTATTGCAGACATTTTGACTACTGGATTTTTAGA
TGGAACGGTGGTTATTCCACTATTTGTGTTAGCCGAACTTCAGCATATTGCGGATTCATCCGATACGCTTAAACGTACAA
GAGGGCGCCGGGGATTAGATATTTTAAATCGAATCCAAAAAGAAGAGGCTATTCAAGTGGAAATGTATGAAGGTGATTTT
GAAGATACGCCAGAAGTGGATAGTAAACTTGTGAAACTTGCTAAAGTAATGGGCGGTATTGTTGTTACAAATGATTATAA
TTTGAACAAAGTATGTGAATTCCAAAATGTACCGGTTTTAAATATTAATGATTTGGCGAATGCTGTAAAACCAGTTGTTT
TGCCAGGTGAGAAAATGACTGTTCTTATGGTGAAAGATGGTAAAGAACACAATCAAGGCGTTGCATATTTAGATGATGGA
ACGATGATTGTTGTAGAAGATGGCCGTAAATTTATTAATGAAACAATCCAAGTGGAAGTAACGAGTGTACTTCAAACATC
AGCAGGAAGAATGATTTTTGCTAAACCATCCTGA

Upstream 100 bases:

>100_bases
TTTGCGGTATAGTCTTTTAATAGTGTAAAATAGTGCTATATGTATATTTGGTAATAGCCCAATTATATATATAAATTAAA
AATGGAAAGGAGGAAACTAA

Downstream 100 bases:

>100_bases
TTAAAAGGAGGAAATAAGCATGAATTATGAGTTGGTTTTTTTAGCGGCAGGTCAAGGGAAACGTATGAATGCCCAGAAAA
ATAAAATGTGGCTAGAGTTA

Product: YacL protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MLTWVIRVCFLILGGTTGVFSLPALWVKLGIGHILLINNPYTDALIGALIFYLITFWAVKYVEAALNWLEEKLAKIAIAT
LVYGGLGLFVGLVIAFFASNALSQTNIPLLNSVVPVILTLVLGYLGFRIGISRRNEFGNFVNNRNAKKRTPEEEKTEEKS
KKTYKILDTSVIIDGRIADILTTGFLDGTVVIPLFVLAELQHIADSSDTLKRTRGRRGLDILNRIQKEEAIQVEMYEGDF
EDTPEVDSKLVKLAKVMGGIVVTNDYNLNKVCEFQNVPVLNINDLANAVKPVVLPGEKMTVLMVKDGKEHNQGVAYLDDG
TMIVVEDGRKFINETIQVEVTSVLQTSAGRMIFAKPS

Sequences:

>Translated_357_residues
MLTWVIRVCFLILGGTTGVFSLPALWVKLGIGHILLINNPYTDALIGALIFYLITFWAVKYVEAALNWLEEKLAKIAIAT
LVYGGLGLFVGLVIAFFASNALSQTNIPLLNSVVPVILTLVLGYLGFRIGISRRNEFGNFVNNRNAKKRTPEEEKTEEKS
KKTYKILDTSVIIDGRIADILTTGFLDGTVVIPLFVLAELQHIADSSDTLKRTRGRRGLDILNRIQKEEAIQVEMYEGDF
EDTPEVDSKLVKLAKVMGGIVVTNDYNLNKVCEFQNVPVLNINDLANAVKPVVLPGEKMTVLMVKDGKEHNQGVAYLDDG
TMIVVEDGRKFINETIQVEVTSVLQTSAGRMIFAKPS
>Mature_357_residues
MLTWVIRVCFLILGGTTGVFSLPALWVKLGIGHILLINNPYTDALIGALIFYLITFWAVKYVEAALNWLEEKLAKIAIAT
LVYGGLGLFVGLVIAFFASNALSQTNIPLLNSVVPVILTLVLGYLGFRIGISRRNEFGNFVNNRNAKKRTPEEEKTEEKS
KKTYKILDTSVIIDGRIADILTTGFLDGTVVIPLFVLAELQHIADSSDTLKRTRGRRGLDILNRIQKEEAIQVEMYEGDF
EDTPEVDSKLVKLAKVMGGIVVTNDYNLNKVCEFQNVPVLNINDLANAVKPVVLPGEKMTVLMVKDGKEHNQGVAYLDDG
TMIVVEDGRKFINETIQVEVTSVLQTSAGRMIFAKPS

Specific function: Unknown

COG id: COG4956

COG function: function code R; Integral membrane protein (PIN domain superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596
- InterPro:   IPR002792 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 39476; Mature: 39476

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTWVIRVCFLILGGTTGVFSLPALWVKLGIGHILLINNPYTDALIGALIFYLITFWAVK
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
YVEAALNWLEEKLAKIAIATLVYGGLGLFVGLVIAFFASNALSQTNIPLLNSVVPVILTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
VLGYLGFRIGISRRNEFGNFVNNRNAKKRTPEEEKTEEKSKKTYKILDTSVIIDGRIADI
HHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEEEEECCHHHHH
LTTGFLDGTVVIPLFVLAELQHIADSSDTLKRTRGRRGLDILNRIQKEEAIQVEMYEGDF
HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCEEEEEECCCC
EDTPEVDSKLVKLAKVMGGIVVTNDYNLNKVCEFQNVPVLNINDLANAVKPVVLPGEKMT
CCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHHCCCCCEEEHHHHHHHHCCEEECCCCEE
VLMVKDGKEHNQGVAYLDDGTMIVVEDGRKFINETIQVEVTSVLQTSAGRMIFAKPS
EEEEECCCCCCCCEEEEECCCEEEECCCHHHHCHHHHEEHHHHHHHCCCCEEEECCC
>Mature Secondary Structure
MLTWVIRVCFLILGGTTGVFSLPALWVKLGIGHILLINNPYTDALIGALIFYLITFWAVK
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
YVEAALNWLEEKLAKIAIATLVYGGLGLFVGLVIAFFASNALSQTNIPLLNSVVPVILTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
VLGYLGFRIGISRRNEFGNFVNNRNAKKRTPEEEKTEEKSKKTYKILDTSVIIDGRIADI
HHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEEEEEECCHHHHH
LTTGFLDGTVVIPLFVLAELQHIADSSDTLKRTRGRRGLDILNRIQKEEAIQVEMYEGDF
HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCEEEEEECCCC
EDTPEVDSKLVKLAKVMGGIVVTNDYNLNKVCEFQNVPVLNINDLANAVKPVVLPGEKMT
CCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHHCCCCCEEEHHHHHHHHCCEEECCCCEE
VLMVKDGKEHNQGVAYLDDGTMIVVEDGRKFINETIQVEVTSVLQTSAGRMIFAKPS
EEEEECCCCCCCCEEEEECCCEEEECCCHHHHCHHHHEEHHHHHHHCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8885268; 11679669 [H]