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The map label for this gene is 226222791

Identifier: 226222791

GI number: 226222791

Start: 154415

End: 156754

Strand: Direct

Name: 226222791

Synonym: Lm4b_00157

Alternate gene names: NA

Gene position: 154415-156754 (Clockwise)

Preceding gene: 226222789

Following gene: 226222792

Centisome position: 5.3

GC content: 39.36

Gene sequence:

>2340_bases
ATGAGGAGAGTGCGTATTTCAGTTAGGCGTTTAGTGGAGTTTGTGCGGAGAAGCGGTAGTATTGATAACCGGATGACAAA
TTCAGACCGCGCCTTAGAAGGAACAAAAATTCATCAATTACTCCAAAAAGAAGCTGGGGAAGAATATGCCGCAGAAGTAC
GGCTAAACCTAGAACGAATAGTGGACGGAATTGCTTTTTCGCTTGATGGACGCGCAGATGGCATCATAAATAGTCGGATG
ATTGATGAAATTAAAACAACAGAGACGCCAATGGATGAAATTACCGAAGATTTTCGACCTCTTCACTGGGCGCAACTTAT
TTGTTATGGATTTATGCTTGCAGAAAAGTCCGATTTGGCAGAAGTTACTCTGCAATTAACGTATTATCAAGTAGTTGACA
AAGAAGTAAAACAATTTCAACATGTAATGAGTCGCGAGGAACTGAGTGTTTTTGTGGACGATTTACTTTCCCAATATGCT
ATTTGGGCAAAGGCATCTGCCGCTTGGGAAATGAAACGAAATAAAACAATTCAAGAATTAACGTTTCCATACGACAACTA
TCGAAGTGGGCAAAGAGAGCTCGCCATTGCGGTGTACCGAACAATATCTTCAGAAGAAAGTTTGTTTTGTGAAGCACCCA
CAGGTATCGGCAAAACAATGTCGACCTTGTTTCCCGGTATTAAAGCTATGGGTGAAGGGAAAACGGATAAATTATTTTAC
TTTACTGCAAAAACAATCACGCGACAAGTTGCCGAAGATGCACTAGATGAGATGCGTCGTAAAGGACTGGCTGCAAGGAG
TGTTACAATAACTGCGAAGGATAAGATATGTTTTTTAGACGAGCGGAAATGTGAACCAGATCATTGCCAATTTGCGCGTG
GTTATTATGATCGTTTGAACGAAGCGTTGTTTGATATGTTGCAATCCGAAGAAGCGATTACCCGTCAAGTTGTTGAGGGT
TATGCCCGAAAATACACACTTTGTCCATTTGAATTATCGCTGGATGTGGCTCTTTTTTGTGATGTAATAGTTTGTGATTA
TAATTATTTATTCGACCCAGTAGTTTACTTAAAACGCTTTTTTGCAGAAGGACCGGGAAAATATACTTTTCTTGTAGATG
AAGTGCATAATTTAGTAGACCGTGCGCGCTCGATGTATTCGGCGACATTAAAAAAATCAACAGTTATGCAAGTCAAACGG
GGACTAGATTCAAAAAAGAACAAACGATTGCTAAATGCAATAAATGTGATGAATAAAGAAATGATTGTGCTTAACAAAAA
ACTAAAGGACTTAGAAAAAACGACTTATGTCCAAAAAAGTGAACTCGTTGATTGGAATGCAGCTGTGTTAAAATTCACCT
TTGTAGCGAAGGAATGGTTGCCGCAAAATACTCAGTCAGAATTACAAGTGGATGTGTTGGACCTTTATTTTGAAAGTTTA
AGATATACTGCCATTGCGGAGTTTTATGATGAGCGTTACGTCACACAAGTTACGAGAAATCACAGGGATTTAGAAATAAA
ACAACTATGTTTGGATCCGGCGTTCTTATTATCAGAGAGGCTAAAACTCGGAAGCAGTTCGGTGCTTTTTTCAGCAACGC
TTCGACCAATAGATTACTATACAAATGTACTTGGTGGTCAAGAAGACACTAGTAGAATGATCTTTTCTTCGCCATTTAAA
CAAAAAAACATGCATTTACTAGTAGCGGATTATATTAGTACGAAATACCAAATGCGTGAAAATAGTATGGAAGCTGTCGT
GGATGCTCTCTATGCTCTCGTCTCTGGGAAAAACGGTAACTATATATTTTTCTTTCCATCATTTCTATATTTACAAAAGG
TATATGATTTATTTAAAGAAAAATATCCTAACATCAGGTTGCAAAAACAAGAGACTGCTATGGATGAAAAGCAGCGAGAG
CATTTTTTAGAAGATTTTCATGCAGAGAATGTAGAAACCTTGATTGGCTTTTGCGTTTTAGGAGGCGTTTTTTCAGAAGG
GGTAGATCTTCGCGGGAACCGATTAGTCGGTGCGGCTGTCGTTGGTGTAGGACTTGCGCAATTGAATCACGAATCTGATT
TAATTAAAGATTATTATAATGAAACGATTGGTCGGGGATTTGATTATGCATATCAGATACCAGGAATGAATAAGGTGCTT
CAAGCAGTTGGCCGGGTTATTCGAGGAGAATCAGATCGTGGCGTAGTGTTGTTAATAGAAGAACGATTTTCTGCCGATCG
TTACCGAGCGTTGTTCCCTACGCACTGGAATCATGCGAAAACAGTGAAGACCACAGACGATATCTCCCGAGAAGTGGCCG
GATTTTGGCGGAATAGCTAA

Upstream 100 bases:

>100_bases
ATGTCTTATCATAAAAGTCCAAAATTAGTATTTTTTATTGAATTGTTACGAACGTAGGTTCTGTGTTATAATTCAACTGG
ATTGTAAAGGAGGACTATTG

Downstream 100 bases:

>100_bases
TTTTCTAGTAGAATAGAAGTAATTAGTCATTTTGGGAGGAAATTATGTATAAAATTATCGCGATAGATATTGATGGCACT
TTATTAAACGACGCACACGA

Product: ATP dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 779; Mature: 779

Protein sequence:

>779_residues
MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERIVDGIAFSLDGRADGIINSRM
IDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLAEVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYA
IWAKASAAWEMKRNKTIQELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY
FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRQVVEG
YARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKR
GLDSKKNKRLLNAINVMNKEMIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL
RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDTSRMIFSSPFK
QKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGNYIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQRE
HFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL
QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS

Sequences:

>Translated_779_residues
MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERIVDGIAFSLDGRADGIINSRM
IDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLAEVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYA
IWAKASAAWEMKRNKTIQELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY
FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRQVVEG
YARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKR
GLDSKKNKRLLNAINVMNKEMIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL
RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDTSRMIFSSPFK
QKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGNYIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQRE
HFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL
QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS
>Mature_779_residues
MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERIVDGIAFSLDGRADGIINSRM
IDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLAEVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYA
IWAKASAAWEMKRNKTIQELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY
FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRQVVEG
YARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKR
GLDSKKNKRLLNAINVMNKEMIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL
RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDTSRMIFSSPFK
QKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGNYIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQRE
HFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL
QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650 [H]

Pfam domain/function: PF06733 DEAD_2 [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 89847; Mature: 89847

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERI
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
VDGIAFSLDGRADGIINSRMIDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLA
HHHHHEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCHH
EVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYAIWAKASAAWEMKRNKTIQEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
TFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY
CCCCHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCHHHHCCCCCCEEEE
FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLN
EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHH
EALFDMLQSEEAITRQVVEGYARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRF
HHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH
FAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKRGLDSKKNKRLLNAINVMNKE
HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
MIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYY
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHCCCCCEEEEHHCCHHHHH
TNVLGGQEDTSRMIFSSPFKQKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGN
HHHCCCCCCCCHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQREHFLEDFHAENVETLIGFCVL
EEEECHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
GGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL
HHHHHCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHH
QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS
HHHHHHHCCCCCCCEEEEECCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERI
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
VDGIAFSLDGRADGIINSRMIDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLA
HHHHHEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCHH
EVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYAIWAKASAAWEMKRNKTIQEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
TFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY
CCCCHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCHHHHCCCCCCEEEE
FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLN
EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHH
EALFDMLQSEEAITRQVVEGYARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRF
HHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH
FAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKRGLDSKKNKRLLNAINVMNKE
HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
MIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYY
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHCCCCCEEEEHHCCHHHHH
TNVLGGQEDTSRMIFSSPFKQKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGN
HHHCCCCCCCCHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQREHFLEDFHAENVETLIGFCVL
EEEECHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
GGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL
HHHHHCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHH
QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS
HHHHHHHCCCCCCCEEEEECCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11029001 [H]