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The map label for this gene is yddU [C]

Identifier: 226222750

GI number: 226222750

Start: 121795

End: 122493

Strand: Direct

Name: yddU [C]

Synonym: Lm4b_00115

Alternate gene names: 226222750

Gene position: 121795-122493 (Clockwise)

Preceding gene: 226222749

Following gene: 226222754

Centisome position: 4.18

GC content: 36.91

Gene sequence:

>699_bases
ATGAAATTTCAGCTTTTTATTCAACCAAAATTAGATGTTCTTCAGGGAAATATTGTCGAATATGAAATACTTTTACGTGA
TGATAGTGCAGTTCCTAGATTTCCTCTATCAGAATTAGAAGCTGTACTCGCGGACGAAGAACTGTATTTAGCTTTTTCCG
AGTGGTTTAGCGAGGCGTTCTTAGACGTTTTAAAGAAATATCCAAATGATCGATTTGCCATAAATATTGCGCCACAACAG
CTTTTTTACATAGAAACACTCCACTGGCTAGACAAATTAAAAAGCGAGAGTCATCGTATAACTGTAGAAATGACCGAAGA
TATTTTCGATGTCCCCGGGCATAAACGCCACCTTAATGCGAACGATAAAAACGCATTTATTCTAAATAAAATTAAAGTGA
TTCACGGTCTCGGCTACCATATCGCCATAGACGATGTTAGTTGCGGATTGAACAGCCTAGAGCGAGTGATGAGCTACCTA
CCTTACATAATAGAGATTAAATTCTCCCTCATTCATTTCAAAAATATACCATTAGAAGATTTGCTACTATTCATTAAAGC
TTGGGCAAATTTTGCTCAGAAAAATAAGCTCGATTTTGTTGTTGAGGGAATTGAAACGAAAGAAACCATGACTCTACTAG
AAAGTCATGGCGTCTCGATTTTTCAAGGTTATCTCGTTAATAAGCCGTTTCCGGTTTGA

Upstream 100 bases:

>100_bases
CATTTTCCGGAATGCCTGTTTGTTTTTGGACTAAATTTTGCGATTAGTACTAAAAATGTATTAGAATAGAGAAGAGAAAT
GAGAAAGGATGATGGGACTC

Downstream 100 bases:

>100_bases
AAACTATCTATTTGATTGAGTAGATTCTCGTGCGAGCTAATGGTGATGGGCTTTTTGGAAAGCAGTAGTCCGCTTTCCCG
TAGCTCTTCTAACACTTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: C-Di-GMP-Specific Phosphodiesterase; GGDEF Domain-Containing Protein; Response Regulator; EAL Domain Protein; Sensory Box/Ggdef Family Protein; Sensory Box-Containing Diguanylate Cyclase; Cyclic Diguanylate Phosphodiesterase Domain Protein; Signal Protein; Cyclic-Di-GMP-Specific Phosphodiesterase; Ammonium Transporter; Diguanylate Phosphodiesterase; EAL Domain-Containing Protein

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQ
LFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYL
PYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV

Sequences:

>Translated_232_residues
MKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQ
LFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYL
PYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
>Mature_232_residues
MKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQ
LFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYL
PYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26931; Mature: 26931

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAF
CEEEEEECCCHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
LDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNA
HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCEECCC
NDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLED
CCCCEEEHHHHHHHHCCCEEEEECCHHCCHHHHHHHHHHCCEEEEEEEEEEEECCCCHHH
LLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEHHHCCCCCCC
>Mature Secondary Structure
MKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAF
CEEEEEECCCHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
LDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNA
HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCEECCC
NDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLED
CCCCEEEHHHHHHHHCCCEEEEECCHHCCHHHHHHHHHHCCEEEEEEEEEEEECCCCHHH
LLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA