Click here to switch to the map view.

The map label for this gene is ysgA [H]

Identifier: 225861791

GI number: 225861791

Start: 1829730

End: 1830470

Strand: Reverse

Name: ysgA [H]

Synonym: SPT_1953

Alternate gene names: 225861791

Gene position: 1830470-1829730 (Counterclockwise)

Preceding gene: 225861794

Following gene: 225861790

Centisome position: 86.66

GC content: 41.3

Gene sequence:

>741_bases
ATGACTATTATAACCTCAAAAGCCAATTCTGTGGTAAAAAATGCCAAGAAATTACACCAAAAAAAATACCGCAAGTCTGC
CTATTTAATTGAAGGCTGGCACTTGTTTGAAGAAGCTGTTCAAGCTGGAGTGACGATTGAGAAAATCTTTACCCTAGAAA
ATTATCGAGATCAGTTAGCTACTTTTTCGCAAACTGTCTGGGTGTCAGAGGATATTTTGCTAGATTTGGCGGATTCTCAG
ACTCCACAGGGAATTGTTGCCGTGGTTCAAAAAGAAGAAGTAGGACAAGCTGATTTGAGTCAGGGCAAGTTCTTGTTTTT
GGAAGATGTGCAAGATCCTGGTAATGTAGGAACTATCATTCGAACTGCGGATGCAGCAGGTTTTACAGGAGTGATTGTTT
CAGATAAGTCGGCAGACATCTACAGTCTCAAAACCCTACGTTCCATGCAAGGTAGTCATTTCCATCTGCCCATTTACCGG
ATGACTAGTCAAGCGCTTCTTGACGAAACTAAAAAGGTAGCTATCCCAGTGCTAGCAACAACCCTATCTAAAGATTCTGT
TGATTACAGAGAACTGCCTTCTATAGAAAATTTTGTACTAGTTATGGGAAATGAGGGTCAAGGAATTAGTCCCCTTATGG
CTGAAAGTGCAGACCAGTTGGTCCATATTAGCATGAAGGGGCAGGCCGAGAGTTTGAATGTTGCAGTTGCAGCCGGTATT
TTAATCTTCCATTTAAGCTAA

Upstream 100 bases:

>100_bases
TGTAAACACCCCAACGAAAGCCGACTCCCTGTACCCTACCTTGGGCAATCATTCTAACCTTTTGCATACCAAACCCCTTT
GATTGTGTTATAATATTTCT

Downstream 100 bases:

>100_bases
TTTTAACTTTTTTTGTTATAATCAAGGAAAGATGTTCACAGAAAAGGAGAAAAGGATGAATCACACTATTATACATGACC
GTGCAGGTCTCAATCAATTT

Product: SpoU rRNA Methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTIITSKANSVVKNAKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFTLENYRDQLATFSQTVWVSEDILLDLADSQ
TPQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYR
MTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGI
LIFHLS

Sequences:

>Translated_246_residues
MTIITSKANSVVKNAKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFTLENYRDQLATFSQTVWVSEDILLDLADSQ
TPQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYR
MTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGI
LIFHLS
>Mature_245_residues
TIITSKANSVVKNAKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFTLENYRDQLATFSQTVWVSEDILLDLADSQT
PQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRM
TSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGIL
IFHLS

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=143, Percent_Identity=33.5664335664336, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1790623, Length=238, Percent_Identity=30.672268907563, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790083, Length=148, Percent_Identity=31.7567567567568, Blast_Score=69, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24666840, Length=270, Percent_Identity=23.3333333333333, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 26955; Mature: 26824

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIITSKANSVVKNAKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFTLENYRDQLA
CEEEECCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCEEEHHHHHHHHHHHHH
TFSQTVWVSEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTII
HHHHHEEECHHHEEEECCCCCCCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCEEEE
RTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLAT
EECCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHEEHHHHEE
TLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGI
HHCCCCCCHHHCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCEEEEEE
LIFHLS
EEEEEC
>Mature Secondary Structure 
TIITSKANSVVKNAKKLHQKKYRKSAYLIEGWHLFEEAVQAGVTIEKIFTLENYRDQLA
EEEECCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCEEEHHHHHHHHHHHHH
TFSQTVWVSEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFLEDVQDPGNVGTII
HHHHHEEECHHHEEEECCCCCCCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCEEEE
RTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLAT
EECCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHEEHHHHEE
TLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGI
HHCCCCCCHHHCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCEEEEEE
LIFHLS
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]