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The map label for this gene is ylmE [H]

Identifier: 225861493

GI number: 225861493

Start: 1525124

End: 1525795

Strand: Reverse

Name: ylmE [H]

Synonym: SPT_1604

Alternate gene names: 225861493

Gene position: 1525795-1525124 (Counterclockwise)

Preceding gene: 225861494

Following gene: 225861492

Centisome position: 72.24

GC content: 38.84

Gene sequence:

>672_bases
ATGAATGTAAAAGAAAATACAGAACTTGTTTTTCGAGAAGTTGCAGAGGCTAGTCTGAGTGCTCATCGAGAGAGTGGTTC
GGTCTCTGTCATTGCAGTTACCAAGTATGTAGATGTACCGACAGCGGAAGCCTTGCTTCCGCTAGGTGTTCATCATATCG
GTGAAAATCGTGTAGATAAGTTTCTGGAAAAATATGAAGCTTTAAAAGATCGAGATGTGACTTGGCATTTGATTGGTACC
TTGCAAAGACGTAAGGTGAAAGATATCATTCAATACGTTGATTATTTCCATGCATTGGACTCAGTAAAGCTAGCAGGGGA
AATTCAAAAAAGAAGTGACCGAGTCATCAAGTGTTTCCTTCAAGTAAATATTTCTAAAGAAGAAAGCAAACACGGTTTTT
CGAGAGAGGAACTGCTGGAAATCTTGCCAGAGTTAGCCAGACTAGATAAGATTGAATATGTTGGTTTAATGACGATGGCA
CCTTTTGAGGCTAGCAGTGAGCAGTTGAAAGAGATTTTCAAGGCGGCCCAAGATTTACAAAGAGAAATTCAAGAGAAACA
AATTCCAAATATGCCTATGACCGAGTTAAGTATGGGAATGAGTCGTGATTATAAAGAAGCGATTCAATTCGGTTCCACTT
TTGTTCGTATAGGTACATCATTTTTTAAGTAG

Upstream 100 bases:

>100_bases
ACAGATTCAGTCGTTTCTCCAGTCGAGCGCTTTGAAGCCCCAATTTCACAAGATGAAGATGAATTGGATACACCTCCATT
TTTCAAAAATCGTTAAGTAA

Downstream 100 bases:

>100_bases
GAGAGAACCATGTCTTTAAAAGATAGATTCGATAGATTTATAGATTATTTTACGGAGGATGAGGATTCAAGTCTCCCTTA
TGAAAAAAGAGATGAGCCTG

Product: pyridoxal phosphate enzyme, YggS family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDKFLEKYEALKDRDVTWHLIGT
LQRRKVKDIIQYVDYFHALDSVKLAGEIQKRSDRVIKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMA
PFEASSEQLKEIFKAAQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFFK

Sequences:

>Translated_223_residues
MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDKFLEKYEALKDRDVTWHLIGT
LQRRKVKDIIQYVDYFHALDSVKLAGEIQKRSDRVIKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMA
PFEASSEQLKEIFKAAQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFFK
>Mature_223_residues
MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDKFLEKYEALKDRDVTWHLIGT
LQRRKVKDIIQYVDYFHALDSVKLAGEIQKRSDRVIKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMA
PFEASSEQLKEIFKAAQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFFK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=189, Percent_Identity=36.5079365079365, Blast_Score=102, Evalue=2e-22,
Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=28.1938325991189, Blast_Score=93, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17533025, Length=233, Percent_Identity=28.3261802575107, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6319435, Length=228, Percent_Identity=31.140350877193, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45550861, Length=241, Percent_Identity=27.3858921161826, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25582; Mature: 25582

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHH
FLEKYEALKDRDVTWHLIGTLQRRKVKDIIQYVDYFHALDSVKLAGEIQKRSDRVIKCFL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAAQDLQ
HHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
REIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFFK
HHHHHHCCCCCCHHHHHHCCCCCHHHHHHHCHHHHHHHHHHCC
>Mature Secondary Structure
MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHH
FLEKYEALKDRDVTWHLIGTLQRRKVKDIIQYVDYFHALDSVKLAGEIQKRSDRVIKCFL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAAQDLQ
HHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
REIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFFK
HHHHHHCCCCCCHHHHHHCCCCCHHHHHHHCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]