Click here to switch to the map view.

The map label for this gene is patM [H]

Identifier: 225860689

GI number: 225860689

Start: 691217

End: 691897

Strand: Reverse

Name: patM [H]

Synonym: SPT_0727

Alternate gene names: 225860689

Gene position: 691897-691217 (Counterclockwise)

Preceding gene: 225860704

Following gene: 225860688

Centisome position: 32.76

GC content: 45.96

Gene sequence:

>681_bases
TTGGATTGGTCCATTGTTGAACAATATCTACCACTATATCAAAAGGCATTCTTTCTGACCTTGCATATTGCAGTTTGGGG
AATTTTGGGATCCTTTCTGCTCGGTTTAATCGTTAGTATCATCCGACATTATCGAATCCCTGTTTTGGCGCAAGTAGCGA
CAGCCTACATTGAATTGTCACGTAATACGCCCCTTTTGATTCAACTCTTCTTTCTCTACTTCGGTCTTCCCCGAATCGGG
ATTGTCCTATCTTCAGAAGTCTGTGCAACGCTTGGGCTTGTCTTTTTAGGAGGCTCCTATATGGCAGAATCTTTCCGAAG
TGGGCTGGAAGCCATCAGTCAAACCCAGCAGGAGATTGGCCTCGCTATTGGTCTGACACCTCTACAGGTCTTTCGCTATG
TGGTTCTTCCGCAAGCAACAGCGGTGGCACTCCCCTCCTTTAGTGCCAATATCATTTTCCTTATCAAGGAAACCTCTGTT
TTCTCAGCAGTGGCTTTGGCCGACCTCATGTATGTCGCCAAGGATTTGATTGGTCTCTACTATGAGACAGACATTGCGCT
AGCTATGTTGGTAGTTGCTTATCTGATCATGCTGCTACCCATCTCACTGGTCTTTAGCTGGATAGAAAGGAGGCTCCGCC
ATGCAGGATTCGGGAATCCAAGTACTCTTTCAAGGAAATAA

Upstream 100 bases:

>100_bases
GGTAAAAAATCCTTATAACGGCAATAAAAAATAGATATTATCCAAAGAAGATTTTAAGTGCTACAATAACTGTATTATTT
CTAGATGGGAGGTTCTATTT

Downstream 100 bases:

>100_bases
TCTCCTGAGAATCTTACAGGGATTGGGCGTTACGATTGGGATATCCATCCTGTCTGTCCTCTTATCCATGATGTTCGGAA
CAGTCATGGGAATCATCATG

Product: ABC transporter membrane-spanning permease - glutamine transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELSRNTPLLIQLFFLYFGLPRIG
IVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIGLAIGLTPLQVFRYVVLPQATAVALPSFSANIIFLIKETSV
FSAVALADLMYVAKDLIGLYYETDIALAMLVVAYLIMLLPISLVFSWIERRLRHAGFGNPSTLSRK

Sequences:

>Translated_226_residues
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELSRNTPLLIQLFFLYFGLPRIG
IVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIGLAIGLTPLQVFRYVVLPQATAVALPSFSANIIFLIKETSV
FSAVALADLMYVAKDLIGLYYETDIALAMLVVAYLIMLLPISLVFSWIERRLRHAGFGNPSTLSRK
>Mature_226_residues
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELSRNTPLLIQLFFLYFGLPRIG
IVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIGLAIGLTPLQVFRYVVLPQATAVALPSFSANIIFLIKETSV
FSAVALADLMYVAKDLIGLYYETDIALAMLVVAYLIMLLPISLVFSWIERRLRHAGFGNPSTLSRK

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=165, Percent_Identity=36.969696969697, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1787030, Length=214, Percent_Identity=30.8411214953271, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786874, Length=221, Percent_Identity=27.1493212669683, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=26.9406392694064, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788645, Length=209, Percent_Identity=25.8373205741627, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=27.5700934579439, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87082239, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994930, Length=161, Percent_Identity=29.8136645962733, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787087, Length=195, Percent_Identity=24.6153846153846, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25113; Mature: 25113

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
RNTPLLIQLFFLYFGLPRIGIVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIG
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LAIGLTPLQVFRYVVLPQATAVALPSFSANIIFLIKETSVFSAVALADLMYVAKDLIGLY
HHHCCCHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
YETDIALAMLVVAYLIMLLPISLVFSWIERRLRHAGFGNPSTLSRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDWSIVEQYLPLYQKAFFLTLHIAVWGILGSFLLGLIVSIIRHYRIPVLAQVATAYIELS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
RNTPLLIQLFFLYFGLPRIGIVLSSEVCATLGLVFLGGSYMAESFRSGLEAISQTQQEIG
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LAIGLTPLQVFRYVVLPQATAVALPSFSANIIFLIKETSVFSAVALADLMYVAKDLIGLY
HHHCCCHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
YETDIALAMLVVAYLIMLLPISLVFSWIERRLRHAGFGNPSTLSRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA