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The map label for this gene is yckA [H]

Identifier: 225860688

GI number: 225860688

Start: 690634

End: 691257

Strand: Reverse

Name: yckA [H]

Synonym: SPT_0726

Alternate gene names: 225860688

Gene position: 691257-690634 (Counterclockwise)

Preceding gene: 225860689

Following gene: 225860687

Centisome position: 32.73

GC content: 42.79

Gene sequence:

>624_bases
ATGCAGGATTCGGGAATCCAAGTACTCTTTCAAGGAAATAATCTCCTGAGAATCTTACAGGGATTGGGCGTTACGATTGG
GATATCCATCCTGTCTGTCCTCTTATCCATGATGTTCGGAACAGTCATGGGAATCATCATGACCTCCCATTCTAGAATCA
TACGATTTTTAACACGATTGTATCTGGAATTTATCCGTATCATGCCCCAGCTGGTGCTACTCTTCATCGTTTACTTTGGC
TTGGCTCGAAACTTTAATATCAATATCTCAGGTGAGACTTCAGCTATTATCGTTTTTACCCTCTGGGGAACAGCTGAAAT
GGGAGACTTGGTACGTGGAGCTATCACTTCTCTCCCTAAACATCAGTTTGAAAGTGGACAGGCACTCGGCTTGACTAATG
TTCAACTTTACTACCACATCATCATCCCACAAGTCTTAAGAAGACTGCTACCGCAGGCTATCAATCTTGTCACTCGGATG
ATTAAAACCACTTCATTCCCAAATCATTCATACCTCTCTCAACTAGATGTAACTTACAAAACCCCTGACCTCATGAGCCA
CTTTCTTCCTCCTCATGAGGTCAGTTTTACTTTCTGCTGTTCCAGTATCGTTTTTCCTCGCTAG

Upstream 100 bases:

>100_bases
TATGAGACAGACATTGCGCTAGCTATGTTGGTAGTTGCTTATCTGATCATGCTGCTACCCATCTCACTGGTCTTTAGCTG
GATAGAAAGGAGGCTCCGCC

Downstream 100 bases:

>100_bases
ATTTCCTCAAAAGGGCAGACTCCTCCCTTGGTGCGTCACACGATTTTTTCATCTCGACTGTTCTTTAATGCATCATTAAC
GACGCTTTTCTTCCAGGTGG

Product: ABC transporter membrane-spanning permease - glutamine transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFG
LARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRM
IKTTSFPNHSYLSQLDVTYKTPDLMSHFLPPHEVSFTFCCSSIVFPR

Sequences:

>Translated_207_residues
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFG
LARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRM
IKTTSFPNHSYLSQLDVTYKTPDLMSHFLPPHEVSFTFCCSSIVFPR
>Mature_207_residues
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLEFIRIMPQLVLLFIVYFG
LARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRM
IKTTSFPNHSYLSQLDVTYKTPDLMSHFLPPHEVSFTFCCSSIVFPR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=184, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786874, Length=192, Percent_Identity=26.5625, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082239, Length=151, Percent_Identity=27.8145695364238, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787030, Length=149, Percent_Identity=30.8724832214765, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787087, Length=176, Percent_Identity=22.1590909090909, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788646, Length=158, Percent_Identity=29.1139240506329, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786873, Length=142, Percent_Identity=25.3521126760563, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23353; Mature: 23353

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRL
CCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLEFIRIMPQLVLLFIVYFGLARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHCCH
HQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIKTTSFPNHSYLSQLDVTYK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
TPDLMSHFLPPHEVSFTFCCSSIVFPR
CHHHHHHCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQDSGIQVLFQGNNLLRILQGLGVTIGISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRL
CCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLEFIRIMPQLVLLFIVYFGLARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHCCH
HQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIKTTSFPNHSYLSQLDVTYK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
TPDLMSHFLPPHEVSFTFCCSSIVFPR
CHHHHHHCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]