| Definition | Brucella melitensis ATCC 23457 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_012441 |
| Length | 2,125,701 |
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The map label for this gene is clpB
Identifier: 225853303
GI number: 225853303
Start: 1818149
End: 1820773
Strand: Reverse
Name: clpB
Synonym: BMEA_A1918
Alternate gene names: 225853303
Gene position: 1820773-1818149 (Counterclockwise)
Preceding gene: 225853304
Following gene: 225853302
Centisome position: 85.66
GC content: 58.63
Gene sequence:
>2625_bases ATGAATATCGAAAAATATACAGAACGGGTCCGCGGCTTCATCCAGTCTGCCCAGACCTTCGCGCTTTCCTCCGGCAATCA GCAATTCACTCCAGAACATATCCTGAAGGTTCTCATCGACGACGATGAGGGGTTGGCGGCGTCGCTGGTCGAGCGGGCTG GCGGACGGGTTGGCGATGTGCGCATGGGCCTGCAAAGCGCGCTTGAAAAACTGCCGAAAGTTTCGGGTGGCAATGACCAG CTCTATCTTTCGCAGCCTCTTGCCAAGGTGTTCTCGCTTGCCGAGGAACTGGCCAGCAAGGCGGGTGACAGCTTCGTCAC CGTCGAGCGCCTCCTGACGGCGCTGGCGATGGAAAAATCCGCCAAAACCTCCGAGATACTTTCTGCTGCGGGCGTCACCC CGACGGCATTGAACAGGGTTATCAACGATATGCGCAAAGGCCGCACCGCCGATTCCGCCTCAGCCGAAAGCAATTATGAT GCTTTGAAGAAATATGCGCGCGATCTGACGGAAGACGCACGCGCGGGCAAGCTTGATCCGGTCATCGGCCGCGATGAGGA AATCCGCCGCACGATCCAGGTTCTGTCACGCCGCACCAAGAACAATCCGGTGCTGATCGGTGAGCCGGGCGTGGGCAAGA CCGCAATCGCGGAAGGTCTGGCGCTGCGCATCGTCAATGGCGACGTGCCCGAATCGCTGAAGGACAAGCAATTGATGGCG CTCGACATGGGCGCGCTGATTGCGGGCGCCAAATATCGCGGCGAATTCGAGGAACGCCTGAAGGCCGTTCTCTCGGAAGT GCAGACGGCTGCCGGGCAGATCATCCTCTTCATCGACGAAATGCACACATTGGTCGGCGCGGGCAAGACGGATGGCGCAA TGGATGCGTCGAACCTTTTGAAGCCTGCTCTGGCGCGCGGTGAATTGCATTGCGTCGGCGCCACCACGCTTGAGGAATAT CGCAAATATGTGGAGAAGGACGCCGCCCTTGCGCGCCGTTTCCAGCCCGTTTTTGTCGATGAGCCAACAGTGGAGGACAC AATCTCCATTCTGCGTGGCCTGAAGGAGAAATACGAGCAGCACCATAAGGTGCGCGTGTCGGACTCCGCGCTGGTGGCTG CGGCAATGCTCTCAAACCGCTATATCACCGACCGTTTCCTGCCGGACAAGGCCATCGACCTTGTGGATGAGGCTGCATCG CGCCTGCGTATGCAGGTCGATTCCAAGCCGGAAGAACTGGACGAGATCGATCGTCGCATCATGCAGCTCAAGATCGAGCG CGAAGCACTGAAGGTGGAAACGGACGCCGCTTCCAAGGACCGCTTGCAGCGCATTGAAAAGGAACTGAGCGATCTTGAGG AAGAATCAGCCGAACTGACCGCCAAGTGGCAGGCGGAAAAGCAGAAGCTTGGGCTTGCTGCCGATCTCAAGCGTCAGCTT GAAGAGGCACGCAATGCACTTGCCATTGCGCAGCGCAATGGTGAGTTTCAGAAAGCGGGCGAGCTTGCCTATGGCACGAT CCCGCAACTGGAAAAGCAACTTGCTGATGCGGAAAGTCAGGAAAACAAGGGTTCCCTCCTGGAAGAAACCGTGACGCCGG ACCATGTGGCGCAGGTCATTTCGCGCTGGACCGGCATTCCGGTTGACCGGATGCTGGAAGGTGAGCGCGAAAAGCTGTTG CGCATGGAAGACGAGATCGGCAAGCGCGTCGTCGGCCAGGGCGAGGCGGTGCAGGCCATATCCAAGGCGGTGCGCCGTGC CCGTGCCGGTCTGCAGGACCCGAACCGGCCCATCGGCTCGTTCATCTTCCTCGGCCCCACTGGCGTCGGCAAGACGGAAC TCACCAAGGCGCTCGCCTCGTTCCTGTTCCAGGATGATACCGCAATGGTGCGTATCGATATGTCGGAATTCATGGAAAAG CATTCCGTGAGCCGCCTTATCGGTGCTCCTCCCGGCTATGTCGGTTATGAAGAGGGTGGTGTGCTGACCGAAGCTGTCCG GCGCAGGCCCTATCAGGTGATCCTGTTCGACGAGATTGAAAAGGCGCACCCGGATGTCTTCAATGTTCTGTTGCAGGTGC TGGACGACGGACGCCTGACGGACGGCCAGGGCCACACGGTTGATTTCCGCAATACGGTCATCATCATGACGTCAAACCTC GGCGCGGAATATCTCGTCAATCTGGGCGAAAACGATGATGTCGAGACTGTTCGCGATGATGTGATGGGCGTGGTCCGTGC TTCGTTCCGGCCGGAATTCCTCAACCGTGTTGATGAAATCATCCTGTTCCACCGGCTGCGCCGCGAAGACATGGGTGCAA TTGTCGATATCCAGATGCAGCGTCTCCAATATCTGCTTTCCGATCGCAAGATCACCTTGCAGCTTGAGGACGACGCCCGC GAATGGCTCGCCAACAAGGGGTATGACCCGGCCTATGGCGCGCGCCCGCTGAAGCGCGTAATCCAGAAGGAAGTGCAGGA TCCGCTGGCCGAACGTATCCTGCTTGGTGATATTCTCGACGGTTCCCTCGTCAAGATCACTGCCGGTTCGGATCGGCTCA ATTTCCGTCCGATCAGCGGTGCGTTCAGCGCGGCGGAGCCGGAAAGAGAAGACGAGAAAGCCTGA
Upstream 100 bases:
>100_bases ATTCCCATATGCACTTTTGAGAAGAGCCCGCCCTTGTGGGGGGTCGTCACCCAACATCTCTCGGTGCCGCGGGACGGACC GAGAGGCAAACGGAGACATT
Downstream 100 bases:
>100_bases CAAAACAAACCTGCCCGGCTTCCTGTCGGGGGGCATCGGCGCTGCGACCTAGCCGGTCGCGGCGCTTTTTCTTTTGGAAG CTGCATCTTTCCCGCCATCT
Product: ATP-dependent chaperone ClpB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MNIEKYTERVRGFIQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGGRVGDVRMGLQSALEKLPKVSGGNDQ LYLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAMEKSAKTSEILSAAGVTPTALNRVINDMRKGRTADSASAESNYD ALKKYARDLTEDARAGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKQLMA LDMGALIAGAKYRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHCVGATTLEEY RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAAMLSNRYITDRFLPDKAIDLVDEAAS RLRMQVDSKPEELDEIDRRIMQLKIEREALKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQL EEARNALAIAQRNGEFQKAGELAYGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVISRWTGIPVDRMLEGEREKLL RMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEK HSVSRLIGAPPGYVGYEEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGHTVDFRNTVIIMTSNL GAEYLVNLGENDDVETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAR EWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILDGSLVKITAGSDRLNFRPISGAFSAAEPEREDEKA
Sequences:
>Translated_874_residues MNIEKYTERVRGFIQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGGRVGDVRMGLQSALEKLPKVSGGNDQ LYLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAMEKSAKTSEILSAAGVTPTALNRVINDMRKGRTADSASAESNYD ALKKYARDLTEDARAGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKQLMA LDMGALIAGAKYRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHCVGATTLEEY RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAAMLSNRYITDRFLPDKAIDLVDEAAS RLRMQVDSKPEELDEIDRRIMQLKIEREALKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQL EEARNALAIAQRNGEFQKAGELAYGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVISRWTGIPVDRMLEGEREKLL RMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEK HSVSRLIGAPPGYVGYEEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGHTVDFRNTVIIMTSNL GAEYLVNLGENDDVETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAR EWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILDGSLVKITAGSDRLNFRPISGAFSAAEPEREDEKA >Mature_874_residues MNIEKYTERVRGFIQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGGRVGDVRMGLQSALEKLPKVSGGNDQ LYLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAMEKSAKTSEILSAAGVTPTALNRVINDMRKGRTADSASAESNYD ALKKYARDLTEDARAGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKQLMA LDMGALIAGAKYRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHCVGATTLEEY RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAAMLSNRYITDRFLPDKAIDLVDEAAS RLRMQVDSKPEELDEIDRRIMQLKIEREALKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQL EEARNALAIAQRNGEFQKAGELAYGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVISRWTGIPVDRMLEGEREKLL RMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEK HSVSRLIGAPPGYVGYEEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGHTVDFRNTVIIMTSNL GAEYLVNLGENDDVETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAR EWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILDGSLVKITAGSDRLNFRPISGAFSAAEPEREDEKA
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family
Homologues:
Organism=Homo sapiens, GI13540606, Length=353, Percent_Identity=33.7110481586402, Blast_Score=197, Evalue=3e-50, Organism=Escherichia coli, GI1788943, Length=854, Percent_Identity=59.1334894613583, Blast_Score=1026, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=323, Percent_Identity=44.8916408668731, Blast_Score=291, Evalue=1e-79, Organism=Saccharomyces cerevisiae, GI6320464, Length=703, Percent_Identity=56.4722617354196, Blast_Score=807, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6323002, Length=860, Percent_Identity=43.8372093023256, Blast_Score=686, Evalue=0.0,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): CLPB_BRUME (Q8YJ91)
Other databases:
- EMBL: AE008917 - PIR: AF3276 - RefSeq: NP_539113.1 - ProteinModelPortal: Q8YJ91 - GeneID: 1195907 - GenomeReviews: AE008917_GR - KEGG: bme:BMEI0195 - NMPDR: fig|224914.1.peg.195 - HOGENOM: HBG413133 - OMA: HISNALN - PhylomeDB: Q8YJ91 - ProtClustDB: CLSK863757 - BioCyc: BMEL224914:BMEI0195-MONOMER - GO: GO:0005737 - InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR017730 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 - Gene3D: G3DSA:1.10.1780.10 - PRINTS: PR00300 - SMART: SM00382 - TIGRFAMs: TIGR03346
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small
EC number: NA
Molecular weight: Translated: 96910; Mature: 96910
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS00870 CLPAB_1; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIEKYTERVRGFIQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGGRVGDV CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHH RMGLQSALEKLPKVSGGNDQLYLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAMEKS HHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC AKTSEILSAAGVTPTALNRVINDMRKGRTADSASAESNYDALKKYARDLTEDARAGKLDP CHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC VIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKQLMA CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCEEEEECCCCCCHHCCCHHHH LDMGALIAGAKYRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLL HHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCCCCCCHHHHH KPALARGELHCVGATTLEEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQ HHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH HHKVRVSDSALVAAAMLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRI HCCEEECCHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH MQLKIEREALKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQL HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH EEARNALAIAQRNGEFQKAGELAYGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVI HHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHH SRWTGIPVDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGS HHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCC FIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVSRLIGAPPGYVGYEEGG EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCC VLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGHTVDFRNTVIIMTSNL HHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEECCC GAEYLVNLGENDDVETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQ CHHHHEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH RLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILD HHHHHHCCCEEEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GSLVKITAGSDRLNFRPISGAFSAAEPEREDEKA CCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure MNIEKYTERVRGFIQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGGRVGDV CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHH RMGLQSALEKLPKVSGGNDQLYLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAMEKS HHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC AKTSEILSAAGVTPTALNRVINDMRKGRTADSASAESNYDALKKYARDLTEDARAGKLDP CHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC VIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKQLMA CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCEEEEECCCCCCHHCCCHHHH LDMGALIAGAKYRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLL HHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCCCCCCHHHHH KPALARGELHCVGATTLEEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQ HHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH HHKVRVSDSALVAAAMLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRI HCCEEECCHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH MQLKIEREALKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQL HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH EEARNALAIAQRNGEFQKAGELAYGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVI HHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHH SRWTGIPVDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGS HHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCC FIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVSRLIGAPPGYVGYEEGG EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCC VLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGHTVDFRNTVIIMTSNL HHHHHHHCCCCEEEEEHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEECCC GAEYLVNLGENDDVETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQ CHHHHEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH RLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILD HHHHHHCCCEEEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GSLVKITAGSDRLNFRPISGAFSAAEPEREDEKA CCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11756688