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The map label for this gene is ybiS [C]

Identifier: 225853302

GI number: 225853302

Start: 1816250

End: 1817476

Strand: Reverse

Name: ybiS [C]

Synonym: BMEA_A1917

Alternate gene names: 225853302

Gene position: 1817476-1816250 (Counterclockwise)

Preceding gene: 225853303

Following gene: 225853298

Centisome position: 85.5

GC content: 58.92

Gene sequence:

>1227_bases
ATGGACCGGCGCGGGCGTATTTTAAGTGTCGAAGCGGCCAATAGTTACGACCGTAACCAATATGCAGCGCGCGGTCGCGC
TGTTGCGCCAGACGATAACTGGACGCTGGATGGGCCTGTCGATGGCGGCGCGCCTTATGATGGTTTCGGCGATGTGCCGG
AAGACCCGAATTATTATCCCGCACCGCCTGCAGCACCCGATTACCAGGGCAATCGCGACGGCCAGGTGCAGCGTTCCGAG
CTGCCGCCGCCAGGCGCCGATTATCCTGACAATACCGGCACTGCCAGCATCGCGCCGGATTACCGGCAGCCGTCAGCGCG
CCCGCAGGGCGTTCCGAATCCAAATGATATGGTGCCTGCTGTCGAGATGCCGAAAGGGCAGGGGGCCAAGGCAAAAATTG
CCGCCTATCAGGTTTTGCTCGATCGGGCCGGTGCTTCGCCGGGCGTGATCGACGGGCGTTCGGGCAGCAATGTGGACAAG
GCCGCTGCTGCTTATCGCGAAATGACCGGCAAAATCATCAATCCGACCGATGAGGCAGCGGTGAATGCCGAACTGGAAGC
GACGGGCGGCCCGGCTTTTGGCGAATATATGATTACCAATGAGGATGTCGGCCGCCAATATGTGGCGTCGATCCCGGAAG
ATTATGCGCATAAGGCACAGCTTCCGGCGATGGCCTATACATCTGTCGCCGAAATGCTGGGCGAGAAGTTTCACATTGAT
GAAGCCTATCTGAAAGAGATCAATCCCGATGTGAACTTCAATCAGCCCGGTTCCGTGGTGAAGGTTCCCAATCTCGGCAA
GCCGGTGCGGGCCAAGGTTGCGCGCATCATCGCCGACAAGGGCCGCAAGCAGGTGCGCGGCTACGATGAAAACGGCAAGC
TTGTCGTCGCCTATCCCTCAACCATCGGCTCGTCGGATAATCCTTCGCCGTCCGGTATCGTGCAGGTGGAGCGCATCGCG
ATCAACCCGAATTATACCTACAATCCGAAGATCAATTTCAAGCAGGGCAATAATGACAAGGTGCTGACCATTCCGCCGGG
GCCGAACGGCCCGGTCGGCACGGTCTGGATCGCCCTGTCAAAACCGACCTACGGTATTCACGGCACGCCGGCGCCGTCCA
GAATTGGCAAGATCTCAAGCCATGGCTGCGTGCGTCTGACCAATTGGGATGCCGAGGAATTGGCCAAGCTGGTGAAACCG
GGCGTGACGGTGGAATTCACTGAATAG

Upstream 100 bases:

>100_bases
GCATCCGGTGCAGCTTGCGCAGCTTTACGATCCGGGCGACGAGATTTATCACGACCGGCGGATTCGCGTTTATATTGATG
CATATGGACGCCGGGTCACG

Downstream 100 bases:

>100_bases
TTTCCGGGGCTTTATCCCGAAATAAAAAGGCCGGATGCGGGTTTTGCATCCGGCTTTTTGCTTTGGATCAGCTCTTGGCC
GATCCGTTGGAAGCCAGTTT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: Spore protein YkuD homolog [H]

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MDRRGRILSVEAANSYDRNQYAARGRAVAPDDNWTLDGPVDGGAPYDGFGDVPEDPNYYPAPPAAPDYQGNRDGQVQRSE
LPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPNDMVPAVEMPKGQGAKAKIAAYQVLLDRAGASPGVIDGRSGSNVDK
AAAAYREMTGKIINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAEMLGEKFHID
EAYLKEINPDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDENGKLVVAYPSTIGSSDNPSPSGIVQVERIA
INPNYTYNPKINFKQGNNDKVLTIPPGPNGPVGTVWIALSKPTYGIHGTPAPSRIGKISSHGCVRLTNWDAEELAKLVKP
GVTVEFTE

Sequences:

>Translated_408_residues
MDRRGRILSVEAANSYDRNQYAARGRAVAPDDNWTLDGPVDGGAPYDGFGDVPEDPNYYPAPPAAPDYQGNRDGQVQRSE
LPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPNDMVPAVEMPKGQGAKAKIAAYQVLLDRAGASPGVIDGRSGSNVDK
AAAAYREMTGKIINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAEMLGEKFHID
EAYLKEINPDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDENGKLVVAYPSTIGSSDNPSPSGIVQVERIA
INPNYTYNPKINFKQGNNDKVLTIPPGPNGPVGTVWIALSKPTYGIHGTPAPSRIGKISSHGCVRLTNWDAEELAKLVKP
GVTVEFTE
>Mature_408_residues
MDRRGRILSVEAANSYDRNQYAARGRAVAPDDNWTLDGPVDGGAPYDGFGDVPEDPNYYPAPPAAPDYQGNRDGQVQRSE
LPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPNDMVPAVEMPKGQGAKAKIAAYQVLLDRAGASPGVIDGRSGSNVDK
AAAAYREMTGKIINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAEMLGEKFHID
EAYLKEINPDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDENGKLVVAYPSTIGSSDNPSPSGIVQVERIA
INPNYTYNPKINFKQGNNDKVLTIPPGPNGPVGTVWIALSKPTYGIHGTPAPSRIGKISSHGCVRLTNWDAEELAKLVKP
GVTVEFTE

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Spore wall. Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 43622; Mature: 43622

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRGRILSVEAANSYDRNQYAARGRAVAPDDNWTLDGPVDGGAPYDGFGDVPEDPNYYP
CCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
APPAAPDYQGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPNDMVPA
CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VEMPKGQGAKAKIAAYQVLLDRAGASPGVIDGRSGSNVDKAAAAYREMTGKIINPTDEAA
EECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCE
VNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAEMLGEKFHID
EEEEEECCCCCCCCEEEEECCHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCC
EAYLKEINPDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDENGKLVVAYPS
HHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEECC
TIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGPVGTVWIALS
CCCCCCCCCCCCEEEEEEEEECCCEEECCEEEEECCCCCEEEEECCCCCCCCEEEEEEEC
KPTYGIHGTPAPSRIGKISSHGCVRLTNWDAEELAKLVKPGVTVEFTE
CCCCCCCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MDRRGRILSVEAANSYDRNQYAARGRAVAPDDNWTLDGPVDGGAPYDGFGDVPEDPNYYP
CCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
APPAAPDYQGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPNDMVPA
CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VEMPKGQGAKAKIAAYQVLLDRAGASPGVIDGRSGSNVDKAAAAYREMTGKIINPTDEAA
EECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCE
VNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAEMLGEKFHID
EEEEEECCCCCCCCEEEEECCHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCC
EAYLKEINPDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDENGKLVVAYPS
HHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEECC
TIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGPVGTVWIALS
CCCCCCCCCCCCEEEEEEEEECCCEEECCEEEEECCCCCEEEEECCCCCCCCEEEEEEEC
KPTYGIHGTPAPSRIGKISSHGCVRLTNWDAEELAKLVKPGVTVEFTE
CCCCCCCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA