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The map label for this gene is ychF [H]

Identifier: 225853016

GI number: 225853016

Start: 1507273

End: 1508376

Strand: Direct

Name: ychF [H]

Synonym: BMEA_A1592

Alternate gene names: 225853016

Gene position: 1507273-1508376 (Clockwise)

Preceding gene: 225853015

Following gene: 225853017

Centisome position: 70.91

GC content: 59.24

Gene sequence:

>1104_bases
ATGGGTTTCAAATGCGGCATCGTCGGTCTGCCAAATGTTGGCAAGTCGACGCTTTTCAACGCGCTGACCAAGACGGCCGC
CGCACAGGCCGCAAATTATCCGTTCTGCACCATTGAGCCGAACACCGGCGAAGTGGCCGTTCCAGATCCGCGCCAGAACG
AAATTGCGCGTATTGCCGGCTCGAAGGAAATCATCCCGACCCGTATCAACTTCGTCGATATTGCCGGCCTCGTGCGCGGC
GCATCGAAAGGCGAAGGTCTCGGTAACCAGTTCCTCGCCAATATCCGCGAAGTCGATGCCATCGTGCATGTGCTGCGCTG
CTTCGAGGACGACGACATCACCCATGTCGAAGGCCGCATCGATCCGGTATCGGACGCCCAGACCGTTGAAACCGAACTTA
TGCTGTCGGACCTCGAAAGCATTGAGCGCCGCATCGTGCAGATCCGCAAGCGCGCGACAGGCAAGGACAAGGAGGCGCTT
GCCATCCTGCCAGTGATGGAAAAGGCGCTGGAACTGCTTCAGAACGGCCAGCCGGTTCGCCTGATGCTGAAGGATATTTC
ACCGGAAGACCTGCTGACACTGAAGGGCCTGAACCTTCTCACCTCCAAGCCGGTGCTCTATGTGTGCAACGTTGCCGAAG
GTGACGCGACAAACGGCAATGCGTTCAGCGCCGCTGTCGACAAGATGGCCGAAGAACAGGGCGCGCAGACGGTTATCATT
TCCGCCGCCATCGAGGCCGAAGTCGCGCAGCTTCCCGATGAGGAAGCCGGGGAATATCTGGAAAGCATGGGGCTGGAAGA
ACCGGGCCTCGACCGCCTGATCCGCGCGGGCTACAAGCTTCTCGACCTCATCACCTATTTCACCGCAGGCCCGAAGGAAA
CCCGCGCCTGGACCATCAAGCGCGGCACCAAGGCGCCAGCCGCAGCAGGCGTGATCCACACCGATTTCGAGCGCGGCTTC
ATCCGCGCCCAGACCATCGCCTATGAAGACTATGTCAAATATAATGGCGAACTGGGTGCCAAGGAGGCCGGCAAGGCTCG
CGACGAAGGCAAGGAATACATCGTCCATGACGGCGATGTGATGCTGTTCCGCTTCAATACCTGA

Upstream 100 bases:

>100_bases
GAAGAAGGATTAATCCCTCGCGACGGCTGCGCCTCTTGACGCTTCCCGGTCCTATGACGCATAGCCACAACAATAAAATT
CTAGTCTGATAGGTAAGATC

Downstream 100 bases:

>100_bases
TACGATCTGGCCGCCGAAAACCGGCGGCCTTTTCTTTATGCCTATTGGGAGGAGACACAGGGTGAGCAAGCCTCAGCCAC
AATATGCTTACGAGGATATG

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRQNEIARIAGSKEIIPTRINFVDIAGLVRG
ASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRIDPVSDAQTVETELMLSDLESIERRIVQIRKRATGKDKEAL
AILPVMEKALELLQNGQPVRLMLKDISPEDLLTLKGLNLLTSKPVLYVCNVAEGDATNGNAFSAAVDKMAEEQGAQTVII
SAAIEAEVAQLPDEEAGEYLESMGLEEPGLDRLIRAGYKLLDLITYFTAGPKETRAWTIKRGTKAPAAAGVIHTDFERGF
IRAQTIAYEDYVKYNGELGAKEAGKARDEGKEYIVHDGDVMLFRFNT

Sequences:

>Translated_367_residues
MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRQNEIARIAGSKEIIPTRINFVDIAGLVRG
ASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRIDPVSDAQTVETELMLSDLESIERRIVQIRKRATGKDKEAL
AILPVMEKALELLQNGQPVRLMLKDISPEDLLTLKGLNLLTSKPVLYVCNVAEGDATNGNAFSAAVDKMAEEQGAQTVII
SAAIEAEVAQLPDEEAGEYLESMGLEEPGLDRLIRAGYKLLDLITYFTAGPKETRAWTIKRGTKAPAAAGVIHTDFERGF
IRAQTIAYEDYVKYNGELGAKEAGKARDEGKEYIVHDGDVMLFRFNT
>Mature_366_residues
GFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRQNEIARIAGSKEIIPTRINFVDIAGLVRGA
SKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRIDPVSDAQTVETELMLSDLESIERRIVQIRKRATGKDKEALA
ILPVMEKALELLQNGQPVRLMLKDISPEDLLTLKGLNLLTSKPVLYVCNVAEGDATNGNAFSAAVDKMAEEQGAQTVIIS
AAIEAEVAQLPDEEAGEYLESMGLEEPGLDRLIRAGYKLLDLITYFTAGPKETRAWTIKRGTKAPAAAGVIHTDFERGFI
RAQTIAYEDYVKYNGELGAKEAGKARDEGKEYIVHDGDVMLFRFNT

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=370, Percent_Identity=44.5945945945946, Blast_Score=303, Evalue=2e-82,
Organism=Homo sapiens, GI58761502, Length=199, Percent_Identity=40.7035175879397, Blast_Score=155, Evalue=5e-38,
Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=59.0163934426229, Blast_Score=437, Evalue=1e-124,
Organism=Escherichia coli, GI1789574, Length=143, Percent_Identity=31.4685314685315, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=368, Percent_Identity=41.5760869565217, Blast_Score=286, Evalue=1e-77,
Organism=Saccharomyces cerevisiae, GI6319499, Length=371, Percent_Identity=39.3530997304582, Blast_Score=260, Evalue=2e-70,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=37.2031662269129, Blast_Score=231, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6321649, Length=200, Percent_Identity=33.5, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24640873, Length=368, Percent_Identity=42.3913043478261, Blast_Score=288, Evalue=4e-78,
Organism=Drosophila melanogaster, GI24640877, Length=368, Percent_Identity=42.3913043478261, Blast_Score=288, Evalue=4e-78,
Organism=Drosophila melanogaster, GI24640875, Length=368, Percent_Identity=42.3913043478261, Blast_Score=288, Evalue=4e-78,
Organism=Drosophila melanogaster, GI24640879, Length=329, Percent_Identity=39.8176291793313, Blast_Score=234, Evalue=5e-62,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39951; Mature: 39820

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRQNEIARIAG
CCEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCCCHHHHHHHCC
SKEIIPTRINFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI
CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
DPVSDAQTVETELMLSDLESIERRIVQIRKRATGKDKEALAILPVMEKALELLQNGQPVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCEE
LMLKDISPEDLLTLKGLNLLTSKPVLYVCNVAEGDATNGNAFSAAVDKMAEEQGAQTVII
EEEECCCHHHHEEECCCHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
SAAIEAEVAQLPDEEAGEYLESMGLEEPGLDRLIRAGYKLLDLITYFTAGPKETRAWTIK
EEHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
RGTKAPAAAGVIHTDFERGFIRAQTIAYEDYVKYNGELGAKEAGKARDEGKEYIVHDGDV
CCCCCCCCCCCEECCHHCCEEEHHHEEHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCE
MLFRFNT
EEEEECC
>Mature Secondary Structure 
GFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRQNEIARIAG
CEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCCCHHHHHHHCC
SKEIIPTRINFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI
CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
DPVSDAQTVETELMLSDLESIERRIVQIRKRATGKDKEALAILPVMEKALELLQNGQPVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCEE
LMLKDISPEDLLTLKGLNLLTSKPVLYVCNVAEGDATNGNAFSAAVDKMAEEQGAQTVII
EEEECCCHHHHEEECCCHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
SAAIEAEVAQLPDEEAGEYLESMGLEEPGLDRLIRAGYKLLDLITYFTAGPKETRAWTIK
EEHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
RGTKAPAAAGVIHTDFERGFIRAQTIAYEDYVKYNGELGAKEAGKARDEGKEYIVHDGDV
CCCCCCCCCCCEECCHHCCEEEHHHEEHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCE
MLFRFNT
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA