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The map label for this gene is mdcF [H]

Identifier: 225852930

GI number: 225852930

Start: 1427664

End: 1428599

Strand: Direct

Name: mdcF [H]

Synonym: BMEA_A1499

Alternate gene names: 225852930

Gene position: 1427664-1428599 (Clockwise)

Preceding gene: 225852929

Following gene: 225852933

Centisome position: 67.16

GC content: 58.76

Gene sequence:

>936_bases
ATGCTTACAACGCTGATTGTCGTTCTCCCCGTCTTTGCGCTGATTTTCTCCGGCTGGGGTGCATTCAAGCTGAAAATTCT
GGGACCGCACGCCATTGCGGAACTCAATCGCTTTGTCGTTTATCTGGCGCTGCCCGCACTCCTTTTCGATATCATGGCCA
ATACCCATGGCAGCGAGCTTTGGCAGCCGGGCTTCATCGCTGTTTTCCTGCTGAGCAGCGCCGTCGCCTTCGCCCTTCCC
TTTCTGGTGCGGCTGCGCGGCAGGCTGCCGCTGGCGGACACCGCGCTCGACGGCCTTAACGCCGCCTATCCCAATACCGG
CTATATGGGTATTCCCCTGTCGATGATCGCCTTCGGTTCGGGCGTGCTGGCCGCAACCACCATTGCGATCATCATCACGG
TCTGCATCACCTTCGCCTTTGCGATCATATTGATCGAGATTGGCCTGCAAACCGAAAAGAAGCCGCTGCACCTCATCTGG
AAAGTGCTGCGCTCCCTGATCCGCAATCCCTTGCTGGTCGCTCCCGCTCTTGGTGCCGCCACTTCCTTTCTCGGCCTCTC
CATCCCCGCTCCGGCAGAAACCTTCCTGAAGATGCTGGGCGGTGCGGCCTCGCCTTGCGCACTGGTCACGCTTGGACTCT
TTCTCGCCCAGCCGCGCAGGATTGAACGCGACAGCGTAAAAGCTATCAGCTTTCTTGTTTCCGTAAAGCTGATCGTCCAG
CCACTCGTCACATGGCTGCTCGCCGTCTATGTCTTCCGCCTGCCCCCGCTTCTGGCTGACAGCGCCGCCCTCCTTGCCGC
CCTTCCCACCGGTACCGGCCCTTTCATGCTGGCGGAACATTATCGCCGCGAGGCGGCAATCACCTCCAATGTCATTCTTT
TTTCGACTATTATTTCAGTCGTCACCCTGTCGATTTTCCTCGCCCTGACGCGATGA

Upstream 100 bases:

>100_bases
GATTCCTGGCCGACACAGGAACTTCTCGACAGGCTTTGAGGTTGTCTCGCAGGCGCAAGGCACCCTTGCGCCTTTCCTTC
CCTGAATTGAATGCCACACC

Downstream 100 bases:

>100_bases
AAACCGGTGGCGGATATGGCGAAAACCGGGCAAATCCTGTCTGTTCCATGGCATTTTCATGAAATGTGAACAGATTTTTC
CTGACAATTATTTCAAAGGT

Product: auxin efflux carrier protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLTTLIVVLPVFALIFSGWGAFKLKILGPHAIAELNRFVVYLALPALLFDIMANTHGSELWQPGFIAVFLLSSAVAFALP
FLVRLRGRLPLADTALDGLNAAYPNTGYMGIPLSMIAFGSGVLAATTIAIIITVCITFAFAIILIEIGLQTEKKPLHLIW
KVLRSLIRNPLLVAPALGAATSFLGLSIPAPAETFLKMLGGAASPCALVTLGLFLAQPRRIERDSVKAISFLVSVKLIVQ
PLVTWLLAVYVFRLPPLLADSAALLAALPTGTGPFMLAEHYRREAAITSNVILFSTIISVVTLSIFLALTR

Sequences:

>Translated_311_residues
MLTTLIVVLPVFALIFSGWGAFKLKILGPHAIAELNRFVVYLALPALLFDIMANTHGSELWQPGFIAVFLLSSAVAFALP
FLVRLRGRLPLADTALDGLNAAYPNTGYMGIPLSMIAFGSGVLAATTIAIIITVCITFAFAIILIEIGLQTEKKPLHLIW
KVLRSLIRNPLLVAPALGAATSFLGLSIPAPAETFLKMLGGAASPCALVTLGLFLAQPRRIERDSVKAISFLVSVKLIVQ
PLVTWLLAVYVFRLPPLLADSAALLAALPTGTGPFMLAEHYRREAAITSNVILFSTIISVVTLSIFLALTR
>Mature_311_residues
MLTTLIVVLPVFALIFSGWGAFKLKILGPHAIAELNRFVVYLALPALLFDIMANTHGSELWQPGFIAVFLLSSAVAFALP
FLVRLRGRLPLADTALDGLNAAYPNTGYMGIPLSMIAFGSGVLAATTIAIIITVCITFAFAIILIEIGLQTEKKPLHLIW
KVLRSLIRNPLLVAPALGAATSFLGLSIPAPAETFLKMLGGAASPCALVTLGLFLAQPRRIERDSVKAISFLVSVKLIVQ
PLVTWLLAVYVFRLPPLLADSAALLAALPTGTGPFMLAEHYRREAAITSNVILFSTIISVVTLSIFLALTR

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33313; Mature: 33313

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTTLIVVLPVFALIFSGWGAFKLKILGPHAIAELNRFVVYLALPALLFDIMANTHGSEL
CHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
WQPGFIAVFLLSSAVAFALPFLVRLRGRLPLADTALDGLNAAYPNTGYMGIPLSMIAFGS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
GVLAATTIAIIITVCITFAFAIILIEIGLQTEKKPLHLIWKVLRSLIRNPLLVAPALGAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHH
TSFLGLSIPAPAETFLKMLGGAASPCALVTLGLFLAQPRRIERDSVKAISFLVSVKLIVQ
HHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
PLVTWLLAVYVFRLPPLLADSAALLAALPTGTGPFMLAEHYRREAAITSNVILFSTIISV
HHHHHHHHHHHHHCCCHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTLSIFLALTR
HHHHHHHHHCC
>Mature Secondary Structure
MLTTLIVVLPVFALIFSGWGAFKLKILGPHAIAELNRFVVYLALPALLFDIMANTHGSEL
CHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
WQPGFIAVFLLSSAVAFALPFLVRLRGRLPLADTALDGLNAAYPNTGYMGIPLSMIAFGS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
GVLAATTIAIIITVCITFAFAIILIEIGLQTEKKPLHLIWKVLRSLIRNPLLVAPALGAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHH
TSFLGLSIPAPAETFLKMLGGAASPCALVTLGLFLAQPRRIERDSVKAISFLVSVKLIVQ
HHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
PLVTWLLAVYVFRLPPLLADSAALLAALPTGTGPFMLAEHYRREAAITSNVILFSTIISV
HHHHHHHHHHHHHCCCHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTLSIFLALTR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]