Click here to switch to the map view.

The map label for this gene is phnF [C]

Identifier: 225852603

GI number: 225852603

Start: 1093916

End: 1094677

Strand: Direct

Name: phnF [C]

Synonym: BMEA_A1147

Alternate gene names: 225852603

Gene position: 1093916-1094677 (Clockwise)

Preceding gene: 225852601

Following gene: 225852605

Centisome position: 51.46

GC content: 54.59

Gene sequence:

>762_bases
TTGAAGGCAAAGACCAGACGAATTGAGAGAAACAGCGGCGTTGCAATCTGGCGACAGATTGCCGATGAGATACGCAGTGA
TATCATGGCCGGGAAACTTCAGCCCGGCGCGCGTATGCCTGCGGAGATCGAGCTGGCCGAGCATTTTGGCGTGAATCGTC
ATACGGTGCGCAATGCCATTGCAGCCCTGACGCAGGAAGGGGTCCTGCGGGCCGAGCAAGGGCGCGGTACTTTCATCGCC
AATGCGAAGCGCCTCACCAATCAGTGCACGCACCCCTCCCGCATTTCACAGACCTTCGCCTCGCAGACACGCGAAACCAA
AGGCATATTGCTGGCAAGCGATTTGGAAACCGCCTCGCCGGAAATTGCCAGCGCACTGGAACTTGAGACCGGGCAGGAAG
TGGTGCGGCTCGAAACCTTGCACAGCGCGGATGGCCACCCGCTTTCGCGTGCCACCCTTTGGCTGGATGCGGCCCGTTTT
CCCGATATTGCAGTTGATTATGCTGAAAGCGGCTCCATTGCTGTCACCCTTAGAAAAGCATCTATTGAAGAATATTTCAG
AAAGTCGACCATCATTTCCGCTCGCCATGCTGATGCCGATGATCGCAGATATCTAAAACTTTCGCCCGGTGCGATTGTGC
TGACAGCTCAGGCGGTGAAAATTGATACGGAAGGAAGACCTGTTCAGTATTCGTTGACCCGCTTTCCAGCAGACCGGATG
GAGTTTTCAATTGAAACCTACCCCATCCATGATCTTGTATAA

Upstream 100 bases:

>100_bases
TGTCCGACCTTGTTGGTTTGATCGTCAAACTTGTCTATTTATATAGATAACTATACAATATCAGAATGAATATAGCCTGC
CAACGATAGGACAACGGCGA

Downstream 100 bases:

>100_bases
GGTCACGCCACCAAAATCAAAAATATCATTAAATAATATTCAGGAACTATTTTTAATTAAAACCCTGACAGATGTTACAG
TTGATAAATATTGGAGTTCA

Product: phosphonates metabolism transcriptional regulator PhnF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKAKTRRIERNSGVAIWRQIADEIRSDIMAGKLQPGARMPAEIELAEHFGVNRHTVRNAIAALTQEGVLRAEQGRGTFIA
NAKRLTNQCTHPSRISQTFASQTRETKGILLASDLETASPEIASALELETGQEVVRLETLHSADGHPLSRATLWLDAARF
PDIAVDYAESGSIAVTLRKASIEEYFRKSTIISARHADADDRRYLKLSPGAIVLTAQAVKIDTEGRPVQYSLTRFPADRM
EFSIETYPIHDLV

Sequences:

>Translated_253_residues
MKAKTRRIERNSGVAIWRQIADEIRSDIMAGKLQPGARMPAEIELAEHFGVNRHTVRNAIAALTQEGVLRAEQGRGTFIA
NAKRLTNQCTHPSRISQTFASQTRETKGILLASDLETASPEIASALELETGQEVVRLETLHSADGHPLSRATLWLDAARF
PDIAVDYAESGSIAVTLRKASIEEYFRKSTIISARHADADDRRYLKLSPGAIVLTAQAVKIDTEGRPVQYSLTRFPADRM
EFSIETYPIHDLV
>Mature_253_residues
MKAKTRRIERNSGVAIWRQIADEIRSDIMAGKLQPGARMPAEIELAEHFGVNRHTVRNAIAALTQEGVLRAEQGRGTFIA
NAKRLTNQCTHPSRISQTFASQTRETKGILLASDLETASPEIASALELETGQEVVRLETLHSADGHPLSRATLWLDAARF
PDIAVDYAESGSIAVTLRKASIEEYFRKSTIISARHADADDRRYLKLSPGAIVLTAQAVKIDTEGRPVQYSLTRFPADRM
EFSIETYPIHDLV

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=222, Percent_Identity=31.981981981982, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082252, Length=238, Percent_Identity=25.2100840336134, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788418, Length=247, Percent_Identity=25.5060728744939, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=24.6753246753247, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28033; Mature: 28033

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKTRRIERNSGVAIWRQIADEIRSDIMAGKLQPGARMPAEIELAEHFGVNRHTVRNAI
CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHCCCCHHHHHHHH
AALTQEGVLRAEQGRGTFIANAKRLTNQCTHPSRISQTFASQTRETKGILLASDLETASP
HHHHHHCCEEECCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCC
EIASALELETGQEVVRLETLHSADGHPLSRATLWLDAARFPDIAVDYAESGSIAVTLRKA
HHHHHHHHCCCHHHEEHHHHHCCCCCCCCHHEEEEECCCCCCEEEEECCCCCEEEEEEHH
SIEEYFRKSTIISARHADADDRRYLKLSPGAIVLTAQAVKIDTEGRPVQYSLTRFPADRM
HHHHHHHHHHEEEECCCCCCCCEEEEECCCEEEEEEEEEEECCCCCCEEEEHHHCCHHHH
EFSIETYPIHDLV
EEEEEECCHHCCC
>Mature Secondary Structure
MKAKTRRIERNSGVAIWRQIADEIRSDIMAGKLQPGARMPAEIELAEHFGVNRHTVRNAI
CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHCCCCHHHHHHHH
AALTQEGVLRAEQGRGTFIANAKRLTNQCTHPSRISQTFASQTRETKGILLASDLETASP
HHHHHHCCEEECCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCC
EIASALELETGQEVVRLETLHSADGHPLSRATLWLDAARFPDIAVDYAESGSIAVTLRKA
HHHHHHHHCCCHHHEEHHHHHCCCCCCCCHHEEEEECCCCCCEEEEECCCCCEEEEEEHH
SIEEYFRKSTIISARHADADDRRYLKLSPGAIVLTAQAVKIDTEGRPVQYSLTRFPADRM
HHHHHHHHHHEEEECCCCCCCCEEEEECCCEEEEEEEEEEECCCCCCEEEEHHHCCHHHH
EFSIETYPIHDLV
EEEEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]